Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80600 615 / 0 WIN1 HOPW1-1-interacting 1 (.1) AT5G46180 194 / 1e-55 DELTA-OAT ornithine-delta-aminotransferase (.1) AT4G39660 186 / 1e-52 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT2G38400 181 / 1e-50 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT3G08860 179 / 5e-50 PYD4 PYRIMIDINE 4 (.1) AT3G22200 162 / 1e-43 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT3G48730 119 / 1e-28 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT5G63570 116 / 9e-28 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1) AT5G57590 68 / 1e-11 BIO1 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1) AT5G45250 49 / 7e-06 RPS4 RESISTANT TO P. SYRINGAE 4, Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031196 [exp] 805 / 0 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10031775 [exp] 246 / 1e-79 AT1G80600 195 / 3e-61 HOPW1-1-interacting 1 (.1) Lus10023299 [exp] 202 / 1e-58 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10038510 [exp] 202 / 2e-58 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10025262 [exp] 199 / 2e-57 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1) Lus10029922 [exp] 181 / 2e-50 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10004480 [exp] 180 / 2e-50 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10009086 [exp] 161 / 1e-43 AT3G08860 625 / 0.0 PYRIMIDINE 4 (.1) Lus10010465 [exp] 156 / 3e-41 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095800 [exp] 671 / 0 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.017G053500 [exp] 637 / 0 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.011G082800 [exp] 192 / 6e-55 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.016G132200 [exp] 183 / 1e-51 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2) Potri.007G085600 [exp] 183 / 2e-51 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.006G106800 [exp] 181 / 6e-51 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.006G020900 [exp] 157 / 7e-42 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.016G018500 [exp] 157 / 1e-41 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.015G101100 [exp] 102 / 3e-23 AT3G48730 749 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) Potri.005G082100 [exp] 81 / 2e-17 AT4G39660 219 / 1e-69 alanine:glyoxylate aminotransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00202 [flax] [poplar] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Lus10008025 pacid=23161758 polypeptide=Lus10008025 locus=Lus10008025.g ID=Lus10008025.BGIv1.0 annot-version=v1.0 ATGAGCTCTCTGCAAACTGCTTCCGGCATCTCCGCATCACAAGCCAACTTCAATCGCCGCCGATTCCTCGACTCAAAGAGAGCAGATACGCATGCAATCC GATTCCGATGTCGGAACCCTATTACGACGGTGTCTTGTCTCAACGTCGACACCGTCAAACTGGCGGCCAAATCCGAGCCACCAGCAATGGCGAGCAGCAG CACCAGCAGCAAAGAGATAATGGAGGCTGAGGCGAAAGTTCTGGTAGGGACTTACGCTAGAGCTCCCGTGGTTCTGACAAGTGGCAAAGGCTGTAAGCTT TACGATTTGGAAGGACGCGAGTATTTGGATTTAACCTCTGGAATCGCCGTCAATGCTTTGGGACACTGCGATTCCGACTGGCTTAAGGCCTTGATTGACC AGGCTGGTTTGTTGACTCACGTTAGCAATGTCTATTACTCCGTTCCTCAGGTGGAGCTAGCCAAGATCTTGGTAGATAGTTCATTTGCTGATAGGGTGTT CTTCTGCAACTCCGGAACCGAAGCGAACGAAGCTGCAATCAAGTTTGCTAGGAAGTTCCAGAGGCATTCTTCCAACCCAGCAGCAACTGAATTCGTTTCC TTCAGCCATAGTTTCCATGGAAGGACAATTGGTGCATTGGCTCTTACGAGTAAAGAGCAGTATAGGAGTCCTTTTGAACCTGTCATGCCTGGAGTTAACT TCGTGAAGTTTGGAGACATCGAAGCCTCCAGGAAGGCGATTCAGCGAGGGAAGACGGCTGCGGTCTTCGTTGAGCCGGTCCAAGGCGAGGGAGGCATATA TGGCGCTGGAAAGGAGTTCTTGCAGTTCCTCCGTGCTGCTTGCGACAAAGCTGGTGCTCTCCTCGTCTTTGATGAGGTGCAATGTGGTATAGGGCGAACC GGACATCTCTGGGCGCACGAAGCATACAGTGTCTTCCCAGATATAATGACGCTCGCCAAACCACTTGCCGGCGGATTACCAATTGGAGCCGTACTGCTGA CCGAAAGAGTTGCTTCAGCCATTAGCTACGGAGACCACGGGAGCACATTCGCCGGTGGCCCTCTGATCTGCAGTGCAGCTCTTTCTGTCCTGAAGAAGAT CTCGGACCCCAGTTTCTTAGCCAGTGTGACCGAGAAAGGGCAGTACTTCAAGGATCTCCTGAAGCAGAAGCTCGGTAATAACCCACATGTGAAAGAAATC CGAGGAGCAGGGCTCATTATCGGAGTTGACTTGGACGTTGCAGCTTCGCCATTGGTGGACGCGTGTCGGGAAGCCGGCCTTCTGGTACTGACTGCTGGGA AAGGGAATGTGGTGAGGCTTGTGCCTCCTTTGGTGATAACTGAGCAGGAACTCAGCCTGGCTGCTGATATTCTGGAAAAGGCTTTGCCAGCACTTGATGC AAGCGATTCCAATGGGATCTGTTATGATGAGTCTCTTCAACTATTTCGCCAGCATGCTTTCAAGAATAGATTAGACTCTCCAATTCATGGTTATGCGGCA TTATCACAATGTGTTGTGAATTACGCCAAGGGGCTTCCCTTAGCGCTAGGAGTTTTGGGGTCCAGTTTAATCAACATGGGATATAGATGTCTGGGAAAGC AAACTGAAGGACCTAGAAGAAGTTCCCGACCTGGACATAGCCAAGATCCTTAG
AA sequence Show only first row Show all	>Lus10008025 pacid=23161758 polypeptide=Lus10008025 locus=Lus10008025.g ID=Lus10008025.BGIv1.0 annot-version=v1.0 MSSLQTASGISASQANFNRRRFLDSKRADTHAIRFRCRNPITTVSCLNVDTVKLAAKSEPPAMASSSTSSKEIMEAEAKVLVGTYARAPVVLTSGKGCKL YDLEGREYLDLTSGIAVNALGHCDSDWLKALIDQAGLLTHVSNVYYSVPQVELAKILVDSSFADRVFFCNSGTEANEAAIKFARKFQRHSSNPAATEFVS FSHSFHGRTIGALALTSKEQYRSPFEPVMPGVNFVKFGDIEASRKAIQRGKTAAVFVEPVQGEGGIYGAGKEFLQFLRAACDKAGALLVFDEVQCGIGRT GHLWAHEAYSVFPDIMTLAKPLAGGLPIGAVLLTERVASAISYGDHGSTFAGGPLICSAALSVLKKISDPSFLASVTEKGQYFKDLLKQKLGNNPHVKEI RGAGLIIGVDLDVAASPLVDACREAGLLVLTAGKGNVVRLVPPLVITEQELSLAADILEKALPALDASDSNGICYDESLQLFRQHAFKNRLDSPIHGYAA LSQCVVNYAKGLPLALGVLGSSLINMGYRCLGKQTEGPRRSSRPGHSQDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10008025 [exp]	0	1
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10013116 [exp]	1.7	0.7753
AT1G76280			Tetratricopeptide repeat (TPR)...		Lus10001597 [exp]	3.2	0.7187
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Lus10004307 [exp]	10.7	0.7214
AT5G20550			2-oxoglutarate (2OG) and Fe(II...		Lus10016145 [exp]	13.6	0.7260
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10006642 [exp]	15.7	0.6358
AT1G77310			unknown protein		Lus10028666 [exp]	17.1	0.6262
AT1G05270			TraB family protein (.1)		Lus10038420 [exp]	21.0	0.4948
					Lus10000293 [exp]	22.0	0.6401
AT4G13990			Exostosin family protein (.1)		Lus10005492 [exp]	22.9	0.7203
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10028668 [exp]	24.4	0.5940

Compare expression of checked genes

Lus10008025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.