Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G12400 639 / 0 unknown protein AT2G25270 570 / 0 unknown protein AT1G80540 430 / 7e-146 unknown protein AT1G71110 395 / 5e-132 unknown protein AT5G67550 57 / 3e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038102 [exp] 814 / 0 AT2G25270 468 / 5e-161 unknown protein Lus10008813 [exp] 805 / 0 AT2G12400 616 / 0.0 unknown protein Lus10001945 [exp] 612 / 0 AT2G25270 650 / 0.0 unknown protein Lus10001929 [exp] 438 / 9e-149 AT2G25270 457 / 3e-156 unknown protein Lus10013492 [exp] 422 / 2e-142 AT1G71110 645 / 0.0 unknown protein Lus10034641 [exp] 392 / 2e-130 AT1G71110 587 / 0.0 unknown protein Lus10007962 [exp] 363 / 5e-120 AT1G71110 578 / 0.0 unknown protein Lus10014341 [exp] 333 / 1e-108 AT2G25270 352 / 7e-116 unknown protein Lus10026050 [exp] 300 / 3e-96 AT2G25270 328 / 4e-107 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G120200 [exp] 731 / 0 AT2G12400 596 / 0.0 unknown protein Potri.006G060600 [exp] 718 / 0 AT2G12400 579 / 0.0 unknown protein Potri.018G023200 [exp] 600 / 0 AT2G25270 595 / 0.0 unknown protein Potri.006G258700 [exp] 570 / 0 AT2G25270 590 / 0.0 unknown protein Potri.010G115500 [exp] 394 / 3e-131 AT1G71110 646 / 0.0 unknown protein Potri.007G132601 [exp] 145 / 2e-37 AT5G67550 189 / 8e-54 unknown protein Potri.017G023400 [exp] 138 / 4e-35 AT5G67550 182 / 3e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008028 pacid=23144279 polypeptide=Lus10008028 locus=Lus10008028.g ID=Lus10008028.BGIv1.0 annot-version=v1.0 ATGCACTTCTCCTTCTCCTCCTCAGCTGCAGCTCCACAGAGTGAGACTGCAACATACCGTTTCCGAGCTCCTCGATTTCCAGAGTTTTCTAGAGCTGGTG ATGGCTTAGTTTTGCCATTTGGAATACGGCGATATCTTGCCGAAGGGAACTCTACGGAAGGGAATTCGACGACACTCGTATTAGCTGCTGAGAGGACGAG AAGGAAAGACCCTTTGGATCACTTGAATCATTACACCGGTGGATTCAACATCAGTAATCAACACTATTGGGCTTCCGTGAGTGCAACAGCGGTCCCATTC TTTCTCCTTGCTGGAATATGGTTTCTTGTATTTGGGTTATCCCTAGCTTTTATCTGCCTCTGCTACTGCTGTTGCCGCGGGGAGCCTTATGGCTATTCTC GAGCTTGCTACGCTTTGTCCCTCATCTTCCTCATCCTTTTCACCGTTGCTGCAATTGCTGGATGTGTTGTTCTTTACACAGGTCAAGGGAAGTTTAACGG CATAACCTCAGACACATTGGACTATGTTGTGAGTCAGGCAGATGTTACTGCTGAAAGCCTCAAAAACGTGTCTGGTTATCTTGCTGCAGCGAAATCAGTT GATGTTGACTCCCTCTTTCTGCCTGCTGATATGCGTAATAAACTTGATAACCTTGTTGCTAAGGCTAACTCCTCGGGAAACACATTGTCCAGCCGTACAC AGGACAACAGGAAGAAGATTAAAGATGGGTTGAATGGCATGAGATTAGCTCTTATAATCCTAGCTGCTGTCATGCTTGGGTTGGCATTTCTTGGCTTTTT ATTTTCCATCTTTGGGATGACTTGTCTCGTATACGTCCTGGTGATTCTTGGATGGATTCTTGTTGCTGGTACATTTATCTTGTGCGGCGTATTTCTTCTC CTTCATAATGTGATGGCGGATACGTGTGTGGCAATGGACGACTGGGTCCAGCATCCAACGGCAAAGACGGCAATGGATGATTTCATCCCATGTGTGGACA ACGCAACAGCACAAGAGACGTTGACGCAGTCGAAGCAAGTCACATTCCAGCTGGTCACCTTAGTAGACACCGTCCTTACAAACTTTTCCAACAGAAACTT CCCACCTCAAGTTGGTCCTCCAGTAAACTATAACCAATCTGGTCCCTTGGTTCCTCTCCTTTGCAATCCATTCAACACTGATCTCACCGACAAAACAACC TGCGCCCCTGGTGAAGTCGACTTGCGCAATGCTACCAATGTGTGGAAGGAATACGTTTGCCAAGTATCAGGATCGGGGAAATGCACAAGCACAGGCCGTC TAACTCCAACATTGTACTCCCAAATGTCATCCTCGGTGAACATCAGCTTCGGACTGTACCGCTACAGCCCGTTCCTGGTGGAGCTAGAGGACTGCACGTT TGTGAGAAGGACATTCACTGACATCAACAGGGAATACTGCCCTGATCTTCGGAAATACACGGAGTGGATCTATGTTGGGCTGGTGATTGTGTCGGCGGCC GTCATGCTGTCATTGATCTTCTGGGTTATCTACGCAAGAGAGCGCCGCCATCGTGCGTATACGAAGCAGTTCATGACTGGAGGAGGATCACACAACAAGG CTGGTCCACACCACCATATATGA
AA sequence Show only first row Show all	>Lus10008028 pacid=23144279 polypeptide=Lus10008028 locus=Lus10008028.g ID=Lus10008028.BGIv1.0 annot-version=v1.0 MHFSFSSSAAAPQSETATYRFRAPRFPEFSRAGDGLVLPFGIRRYLAEGNSTEGNSTTLVLAAERTRRKDPLDHLNHYTGGFNISNQHYWASVSATAVPF FLLAGIWFLVFGLSLAFICLCYCCCRGEPYGYSRACYALSLIFLILFTVAAIAGCVVLYTGQGKFNGITSDTLDYVVSQADVTAESLKNVSGYLAAAKSV DVDSLFLPADMRNKLDNLVAKANSSGNTLSSRTQDNRKKIKDGLNGMRLALIILAAVMLGLAFLGFLFSIFGMTCLVYVLVILGWILVAGTFILCGVFLL LHNVMADTCVAMDDWVQHPTAKTAMDDFIPCVDNATAQETLTQSKQVTFQLVTLVDTVLTNFSNRNFPPQVGPPVNYNQSGPLVPLLCNPFNTDLTDKTT CAPGEVDLRNATNVWKEYVCQVSGSGKCTSTGRLTPTLYSQMSSSVNISFGLYRYSPFLVELEDCTFVRRTFTDINREYCPDLRKYTEWIYVGLVIVSAA VMLSLIFWVIYARERRHRAYTKQFMTGGGSHNKAGPHHHI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G12400			unknown protein		Lus10008028 [exp]	0	1
AT2G25270			unknown protein		Lus10038102 [exp]	1.7	0.9390
AT1G21240		WAK3	wall associated kinase 3 (.1)		Lus10013387 [exp]	2.4	0.9278
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10016847 [exp]	2.4	0.9463
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10008113 [exp]	4.5	0.9336
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10013039 [exp]	5.5	0.9298
AT5G38700			unknown protein		Lus10002433 [exp]	5.7	0.9409
AT5G52360		ADF10	actin depolymerizing factor 10...		Lus10039229 [exp]	10.0	0.8919
AT4G34320			Protein of unknown function (D...		Lus10040489 [exp]	11.0	0.9227
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10021238 [exp]	11.7	0.8943
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009228 [exp]	12.3	0.8458

Compare expression of checked genes

Lus10008028 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.