Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G12646 290 / 3e-99 PLATZ transcription factor family protein (.1) AT3G60670 185 / 5e-58 PLATZ transcription factor family protein (.1) AT1G31040 160 / 2e-48 PLATZ transcription factor family protein (.1) AT1G32700 110 / 3e-29 PLATZ transcription factor family protein (.1.2) AT1G43000 108 / 8e-29 PLATZ transcription factor family protein (.1) AT1G21000 108 / 2e-28 PLATZ transcription factor family protein (.1.2) AT2G01818 108 / 2e-28 PLATZ transcription factor family protein (.1) AT4G17900 107 / 3e-28 PLATZ transcription factor family protein (.1.2) AT1G76590 107 / 4e-28 PLATZ transcription factor family protein (.1) AT5G46710 101 / 1e-25 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038103 [exp] 440 / 4e-158 AT2G12646 289 / 1e-98 PLATZ transcription factor family protein (.1) Lus10008814 [exp] 315 / 2e-108 AT2G12646 301 / 4e-103 PLATZ transcription factor family protein (.1) Lus10039989 [exp] 313 / 2e-107 AT2G12646 292 / 3e-99 PLATZ transcription factor family protein (.1) Lus10009283 [exp] 182 / 1e-56 AT3G60670 249 / 2e-83 PLATZ transcription factor family protein (.1) Lus10015881 [exp] 181 / 3e-56 AT3G60670 251 / 4e-84 PLATZ transcription factor family protein (.1) Lus10036226 [exp] 149 / 2e-44 AT1G31040 191 / 3e-61 PLATZ transcription factor family protein (.1) Lus10000261 [exp] 122 / 2e-35 AT2G12646 40 / 5e-05 PLATZ transcription factor family protein (.1) Lus10000482 [exp] 118 / 5e-32 AT4G17900 284 / 2e-97 PLATZ transcription factor family protein (.1.2) Lus10020337 [exp] 118 / 1e-31 AT4G17900 282 / 3e-96 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G060500 [exp] 323 / 2e-112 AT2G12646 321 / 1e-111 PLATZ transcription factor family protein (.1) Potri.018G116000 [exp] 320 / 4e-111 AT2G12646 318 / 2e-110 PLATZ transcription factor family protein (.1) Potri.014G059300 [exp] 171 / 1e-52 AT3G60670 238 / 6e-79 PLATZ transcription factor family protein (.1) Potri.001G159200 [exp] 166 / 1e-50 AT1G31040 294 / 3e-101 PLATZ transcription factor family protein (.1) Potri.003G075600 [exp] 166 / 4e-50 AT1G31040 306 / 1e-105 PLATZ transcription factor family protein (.1) Potri.002G144900 [exp] 164 / 1e-49 AT3G60670 250 / 7e-84 PLATZ transcription factor family protein (.1) Potri.013G078500 [exp] 114 / 9e-31 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2) Potri.008G137300 [exp] 114 / 1e-30 AT2G01818 221 / 5e-73 PLATZ transcription factor family protein (.1) Potri.003G092800 [exp] 113 / 2e-30 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.006G119400 [exp] 110 / 1e-29 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10008031 pacid=23144296 polypeptide=Lus10008031 locus=Lus10008031.g ID=Lus10008031.BGIv1.0 annot-version=v1.0 ATGGGCAAGAAGGCGGCGACATGGTTGGAAGCGCTCCAAAATCAGAAGTTTTTCTTGACTTGTTCATACCACAAATCGGTCAAGAAGAATGTATGTTGTC TTGATTGTTGTATTAGTATTTGTGCTCACTGCGTCCCTGCTCATCGCTCCCACAGATTGCTTCAAATTCGTCGATATGTTTACAATGACGTTGTCCAACT CGAAGACCTCCAAAGACTTGTTGATTGTTCCAATGTTCAGGCCTACACAATCAACGGTGCAAAGGTGGTGTTCATCAAGAAAAGGCCTCAAAACAGGCAA TTCAAAGGCTCCGGAAACTATTGCACGTCCTGTGATAGAACCCTCCAACACCCATTCATCCACTGCTCTCTTGCTTGCAAGGTGGAATTTGTGATGAAGC ATTACAAGGATTTAAGTCTATTTGTAAAGAAATGCAAGACATTAACACTTGGACCGGACTTTTTGATCCCACAAGACATCATGAGAGACGAAAATGACAA CATGACGACGACCAATCATTCCACAATTATGGATTATGACGAGCCAGTGAGCTGGTTGTCCGGATCTCATTCCAGCTCCTCTTCCTCCTCTTATTTATTA GGATGTACGAACAACATGGTTGCAGCTTGTTCGAACAAAGTTGTACGAAAGAAGAGAAGCGGGTTGGTCTATTTCTGGTTGACGAATATCTATGATGATC ATGATCATAATAGTAGTACAGTCTCCGACGAGGACATGGCCACAAGCATGAGTCGAAGGAAAGGCGTTCCTCAACGTTCACCTATGTGTTAA
AA sequence Show only first row Show all	>Lus10008031 pacid=23144296 polypeptide=Lus10008031 locus=Lus10008031.g ID=Lus10008031.BGIv1.0 annot-version=v1.0 MGKKAATWLEALQNQKFFLTCSYHKSVKKNVCCLDCCISICAHCVPAHRSHRLLQIRRYVYNDVVQLEDLQRLVDCSNVQAYTINGAKVVFIKKRPQNRQ FKGSGNYCTSCDRTLQHPFIHCSLACKVEFVMKHYKDLSLFVKKCKTLTLGPDFLIPQDIMRDENDNMTTTNHSTIMDYDEPVSWLSGSHSSSSSSSYLL GCTNNMVAACSNKVVRKKRSGLVYFWLTNIYDDHDHNSSTVSDEDMATSMSRRKGVPQRSPMC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G12646			PLATZ transcription factor fam...		Lus10008031 [exp]	0	1
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10004517 [exp]	2.4	0.9538
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10026088 [exp]	5.7	0.9257
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	6.3	0.9416
AT3G15760			unknown protein		Lus10030098 [exp]	7.9	0.9374
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10022726 [exp]	8.4	0.9282
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10034577 [exp]	8.8	0.9343
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	10.6	0.9365
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10012869 [exp]	11.8	0.9230
AT1G29760			Putative adipose-regulatory pr...		Lus10034735 [exp]	12.0	0.9186
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	13.4	0.9352

Compare expression of checked genes

Lus10008031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.