Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47910 251 / 1e-83 CRR6 chlororespiratory reduction 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038104 [exp] 404 / 5e-144 AT2G47910 294 / 3e-101 chlororespiratory reduction 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G060100 [exp] 267 / 7e-90 AT2G47910 308 / 1e-106 chlororespiratory reduction 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08847 [flax] [poplar] Crr6 Chlororespiratory reduction 6
Representative CDS sequence Show only first row Show all	>Lus10008032 pacid=23144286 polypeptide=Lus10008032 locus=Lus10008032.g ID=Lus10008032.BGIv1.0 annot-version=v1.0 ATGGCTGCCACCAGTAAACCCGTTTTCCCTCCAAAACAATTCATTTCTTCCTCGTCAGCTATACCATGGACGTCATTCCGCAAACCCATCTCCCGTTCTC TGGTGGGCATGAAGAATTTGACGGACGTTAGCAGACAAGTGTCGGCATCCGTTTCGTTCGACCCCTCTAGAAATTTCGACCTTAACTTATTTGACGACGA AGAGTCGTCGAATGTTGCGCCGCCGCCAATGCCAGCGAGCGAAGGGCGATACGAAGTAGTGATCAACAATGAAGTAATTAGCAAGCTTGACTTGTCTCCC TTTCAGAATGCTACTGGCATTACTTCCTCCTCAGCAGGGGATCCAAAGGAGTTGTTGGAAAGAACGGTGGGATTTACATTTAATTACGAGAGAGAGGATC CAAGAGACCCAAGAGAGTTTTCAGAATTCCCAGATATAAGGTTGTGGTTTGTCAGACTGGACGCTGCGTATCCATGGCTGCCTGTAGTCTTGGATTGGAG AGCAGGGGAGCTTGCTCGTTATGCTGCCTTGTTGGTCCCTCATCAGGATTGGTTGCTATTAAATAGGATTGGTAATGATACATTTGCATCGCAATTAGAA AACAATTGCGTGTATGGTGCAGATGAACATGAAGATGGGGGTAGTGTTCAATCCAGAGGCATTGGAGTTGTTCGTGATGAAGAAAGTATTTGTGTGAAGA AAGTTTTTGTTGGATATTCTTGGTTGAAGAAGCACAATGTTGCCAAGCCTAGATTGAAGGCCAAAGACATGGCCAGAATGCTTGGGTTTGGAATTGGAGA TGAGCTTTTTGAACTAATCGAGACAAATTAA
AA sequence Show only first row Show all	>Lus10008032 pacid=23144286 polypeptide=Lus10008032 locus=Lus10008032.g ID=Lus10008032.BGIv1.0 annot-version=v1.0 MAATSKPVFPPKQFISSSSAIPWTSFRKPISRSLVGMKNLTDVSRQVSASVSFDPSRNFDLNLFDDEESSNVAPPPMPASEGRYEVVINNEVISKLDLSP FQNATGITSSSAGDPKELLERTVGFTFNYEREDPRDPREFSEFPDIRLWFVRLDAAYPWLPVVLDWRAGELARYAALLVPHQDWLLLNRIGNDTFASQLE NNCVYGADEHEDGGSVQSRGIGVVRDEESICVKKVFVGYSWLKKHNVAKPRLKAKDMARMLGFGIGDELFELIETN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10008032 [exp]	0	1
AT1G56500			haloacid dehalogenase-like hyd...		Lus10029840 [exp]	3.9	0.9250
AT5G02830			Tetratricopeptide repeat (TPR)...		Lus10015053 [exp]	6.5	0.9196
AT1G56500			haloacid dehalogenase-like hyd...		Lus10020699 [exp]	7.7	0.9066
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10013856 [exp]	12.0	0.8877
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10014672 [exp]	14.7	0.9041
AT5G35170			adenylate kinase family protei...		Lus10036326 [exp]	15.7	0.8872
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Lus10022091 [exp]	15.8	0.8790
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10019083 [exp]	15.9	0.8774
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10004576 [exp]	16.4	0.8927
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10039953 [exp]	20.5	0.7942

Compare expression of checked genes

Lus10008032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.