Gene [FLAX] | FIBexDB

Lus10008033 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10005983 [exp]	133 / 3e-36	AT3G18750	523 / 3e-178	ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3)
Lus10038713 [exp]	122 / 4e-36	ND	/
Lus10009403 [exp]	122 / 4e-34	AT2G44860	120 / 2e-33	Ribosomal protein L24e family protein (.1.2)
Lus10008761 [exp]	123 / 8e-34	AT2G25010	79 / 1e-15	Aminotransferase-like, plant mobile domain family protein (.1)
Lus10033128 [exp]	122 / 2e-32	AT1G74860	147 / 1e-38	unknown protein
Lus10020427 [exp]	119 / 4e-32	AT1G10840	570 / 0.0	translation initiation factor 3 subunit H1 (.1.2)
Lus10007989 [exp]	120 / 8e-32	AT4G26190	247 / 3e-67	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Lus10027047 [exp]	87 / 2e-20	AT1G17930	119 / 1e-28	Aminotransferase-like, plant mobile domain family protein (.1)
Lus10011962 [exp]	81 / 5e-19	ND	/

Poplar homologues

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No hit found

PFAM info

Representative CDS sequence

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>Lus10008033 pacid=23144274 polypeptide=Lus10008033 locus=Lus10008033.g ID=Lus10008033.BGIv1.0 annot-version=v1.0

ATGGCGAAGACAAAAGGCGGAGGTAAGCAGCATAGCACTAACCCTATCAAAGAAGAGACTGATGGAATTCAGAAAATGCGAGGGAAGGGCAAGTCAATGG

AAACTATTAACCGACTTGTCGAGCGTGCGATTACTGCTTCTAATAGGAGAGAAGCAGATAAGAAGAAGAAAAAACAAAAGATCTACGAAACCCCTGAGCC

TTTCCCCCCAATTAGAATTCCGATGATGGCGAGGAGGAGTTATTTGGTGGCTACGAGTCTGATACCTATCCGCCTCTACCGTTTAGGGTTTTTACTGGTT

CGTCTCATGCTTCAGCGAGCGTTGGTGTTGCAGCTGGGAGAGAGCCCTTCCGCGAGTGTTGGAGTTGCAGCTGGGAGAGATGCTAGTTTTGCTCCCGCCA

CGAGTACACATGGTGGGAGAGGGATGAGGAGGTCCACACTACTGGGGTTGCGGGAAACCTTTCCCGCACTTGGCAGCTGGAGTCGGGGATTGAGGATGGA

GGGCCGATTGCGACCAGTGTGA

AA sequence

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>Lus10008033 pacid=23144274 polypeptide=Lus10008033 locus=Lus10008033.g ID=Lus10008033.BGIv1.0 annot-version=v1.0

MAKTKGGGKQHSTNPIKEETDGIQKMRGKGKSMETINRLVERAITASNRREADKKKKKQKIYETPEPFPPIRIPMMARRSYLVATSLIPIRLYRLGFLLV

RLMLQRALVLQLGESPSASVGVAAGRDASFAPATSTHGGRGMRRSTLLGLRETFPALGSWSRGLRMEGRLRPV

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008033 [exp]	0	1

Lus10008033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.