Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038105 [exp] 114 / 9e-34 ND / Lus10008816 [exp] 56 / 2e-11 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008034 pacid=23144269 polypeptide=Lus10008034 locus=Lus10008034.g ID=Lus10008034.BGIv1.0 annot-version=v1.0 ATGCTGATGAGACCCTCTTTCATTGCTTATCTTCTACTTGTTTGCTTCCTCCTTCAACAAGCTCAAGGGATACGGCTCGAGAAGAGATTCCTGGATCGAG CGGCGGCGGAGAAGGAGAAGAAGAAGAGCAAGACGATCTCACCATCATTAATAATGAAGAAAACTCGACATCCTAATGGTGGAGTAATAATAGTGGAAGA AGAAGCAACAAAAGTTGTTTGCAAAGATGGACAACACTGTACTAGTGGTGATGAGATGAAGACAAGATCATCATCATCATCATCATCGTACCACTGGCTT CATGAAGATTACTATGGACCTAGGAGGCACAGACCTAGGCACCATTAG
AA sequence Show only first row Show all	>Lus10008034 pacid=23144269 polypeptide=Lus10008034 locus=Lus10008034.g ID=Lus10008034.BGIv1.0 annot-version=v1.0 MLMRPSFIAYLLLVCFLLQQAQGIRLEKRFLDRAAAEKEKKKSKTISPSLIMKKTRHPNGGVIIVEEEATKVVCKDGQHCTSGDEMKTRSSSSSSSYHWL HEDYYGPRRHRPRHH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008034 [exp]	0	1
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10033873 [exp]	6.1	0.8538
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10016708 [exp]	19.0	0.7758
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Lus10028786 [exp]	52.1	0.7682
					Lus10039776 [exp]	149.6	0.7300
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10025520 [exp]	158.6	0.7080
AT5G05340			Peroxidase superfamily protein...		Lus10006534 [exp]	220.6	0.7072
AT2G41760			unknown protein		Lus10007544 [exp]	247.6	0.7032

Compare expression of checked genes

Lus10008034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.