Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20360 538 / 0 Phox3 Phox3, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT2G25290 493 / 1e-165 Phox1 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein AT4G32070 471 / 5e-156 Phox4 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT1G62390 327 / 2e-101 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT4G30480 69 / 1e-12 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G58620 61 / 3e-09 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT2G42580 55 / 1e-07 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT1G53300 53 / 7e-07 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT1G62740 52 / 9e-07 Hop2 Hop2, stress-inducible protein, putative (.1) AT3G25230 52 / 2e-06 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038106 [exp] 1300 / 0 AT2G25290 655 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10006196 [exp] 696 / 0 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001927 [exp] 678 / 0 AT2G25290 879 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001947 [exp] 501 / 9e-169 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001948 [exp] 487 / 6e-163 AT4G32070 864 / 0.0 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10039592 [exp] 335 / 3e-104 AT1G62390 888 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10029481 [exp] 327 / 3e-101 AT1G62390 889 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10035117 [exp] 72 / 2e-13 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 70 / 3e-12 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G121100 [exp] 824 / 0 AT2G25290 737 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.006G258300 [exp] 714 / 0 AT2G25290 680 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G023500 [exp] 518 / 1e-175 AT2G25290 851 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.004G002900 [exp] 338 / 2e-105 AT1G62390 926 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G021000 [exp] 275 / 1e-81 AT1G62390 885 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.006G178900 [exp] 73 / 6e-14 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.018G100700 [exp] 70 / 5e-13 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.002G094800 [exp] 57 / 3e-08 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.007G091200 [exp] 57 / 3e-08 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.001G205300 [exp] 57 / 4e-08 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10008035 pacid=23144285 polypeptide=Lus10008035 locus=Lus10008035.g ID=Lus10008035.BGIv1.0 annot-version=v1.0 ATGACGAAGCAGCAGCAGAACGGGAAGGTGAGTAGCCCCAAGACAACAACTAGTAGCCCTAAGCCCACCATGGATAAAGATGAAGAAGTTTTCATTTCCT TATCTCAAGAATTGAAGGATGAAGGGAACAAACTGTTTCAGAGGAGGGATCACAATGGAGCTCTGGCAAAGTACGAGAAGGCTATCAAATTGCTGCCGAA AACCCACATAGATGTGTCTCACCTGAGAAGCAACATGGCTGCCTGCTATATGCAGATGGGTCTTAGTCAATACCCTAGGGCAATTCACGAGTGTAACTTG GCATTGGAGGTCACACCAAAGTATGGCAAGGCGTTGTTGAAGAGGGCTAGGTGTTATGAGGCTCTGAACCGGTTGGACTTAGCTCTACGAGATGTCGGTA CCGTATTGAAGATGGAGCCAGCTAATGTGATGGCATTTGAAGTTTGGGAAAGGGTGAAGAAATCTCTAGAGGAGAAGGGGCTCACTGTGAATGATGCATC CATCGAACTGCCTCCTGACTATGCTGAACCACCGCCTAGTTGTTCCTCTACTCCGACAAAGGCCAAAACACCTAAAGAGAAGACACCGAAGAAGAAGAAC AGAAAAAGTGACGAAAAGAATGGTACTGAGGAGAAGAAGGATTCTAATGATCAAGTGAGAGAAAACAAGGCTGAGAAGAGAAATATGAAACTAGTGATGG GAGATGATATAAGGTGTGCTCAGGTCCCTGTTAATTGCAGCCTTTTGGAACTAAAAGAAGTGGTCTGTGACCGATTTCCAGGTTCGAGACCTGTTCTTAT AAAATATAAGGACCAAGAAGGAGATTTGATCACTATAACAACTGATGAAGACCTGAGGTTGGCTGAAACTTGTGCTTCACCACCACAAGGCTCTTTTAGG TTGTATCTGATCGAAATCAATCCTCAAGAAGATCCCATTGTGCAAAGACTTACGCAAGCTGGTCGTATGAAAAGAGTGGACACAGGGACATGGAACATGG AGAGGGACAAAGAGATGAAGAAGGGAATGCGCTATGTCGATGAATGGATTGTAGAATTCGCTAAGCTGTTCAAGGACCATGTGGCTCTCGATACTGATAC GTACTTAGGTCTCAGTGATCTTGGTATTAAGTTATACTCCGAGGCTATTGAGGAGACTGTTACAAACGATGAAGCACAAGGCCTTTTCAGTACTGCGGCC GAGAATTTCCAGGAGATGGCAGCATTGGCGTTGTTCAACTGGGGAAATGTTCATATGTCCAGAGCAAGGAAGAAGATTGAATTCAAGGATGATGATGATA CCTCAAGAGAGTTGATACTTGAGCAAATCAACGCTGGATTCGAGTGGACGCAGAGGGAGTACTTGGAAGCAGGGCAGAGGTATGAAGAAGCCCTTCAAAT CAAACCCGACTTTTATGAAGGTCTTCTAGCTTTGGGACAGCAGCAGTTCGAGAGGGCCAGACTTACTTGGTACTATGCACTTAGCAACAAAGTTGATTTG TCAACTTGGTCTTATGAAGAGGTCATACAACTCTATAATAGTGCTGAGCAAAATGTAGATAGGGGCCTCCAAATGTGGGAAGCATCACAATCACAACGTA TTGCCGATCTGTCTGATAGAACCAAGATTAAATCTGTACCGCAGGGAACACTGCTAGATGAATTGTTTAAAGATACATCTCCAGAGGATGCTTCTAAGCA GGTTAAAGATTTGAAGTCCCAGATGAATCTGCTGCATGGAACCATCCTCTATGAACGATCCATGATGGAATATAGACTGGGGATCCCTGTCTGGCAGGAA TGTTTGGAAGTTTCACTCGACAAGTTTCAGCTGGCCGGAGCTTCCCATACAGATATAGCTGTGATGATGAAGAACCACATTTCAAATGACAGTTCGATGG ATGGATTGGGATTCAAGATTGATGAGATAGTCGAGGCGTGGAATGACATGAATGAAGCAAAGAAATGGCAGAGACGGGTGCATTCGTTCCGGTTAGAACC ATTGCTAAGACGTCGAGTTTCAAAGATCTACCATGCCTTGGAGGTTACATGA
AA sequence Show only first row Show all	>Lus10008035 pacid=23144285 polypeptide=Lus10008035 locus=Lus10008035.g ID=Lus10008035.BGIv1.0 annot-version=v1.0 MTKQQQNGKVSSPKTTTSSPKPTMDKDEEVFISLSQELKDEGNKLFQRRDHNGALAKYEKAIKLLPKTHIDVSHLRSNMAACYMQMGLSQYPRAIHECNL ALEVTPKYGKALLKRARCYEALNRLDLALRDVGTVLKMEPANVMAFEVWERVKKSLEEKGLTVNDASIELPPDYAEPPPSCSSTPTKAKTPKEKTPKKKN RKSDEKNGTEEKKDSNDQVRENKAEKRNMKLVMGDDIRCAQVPVNCSLLELKEVVCDRFPGSRPVLIKYKDQEGDLITITTDEDLRLAETCASPPQGSFR LYLIEINPQEDPIVQRLTQAGRMKRVDTGTWNMERDKEMKKGMRYVDEWIVEFAKLFKDHVALDTDTYLGLSDLGIKLYSEAIEETVTNDEAQGLFSTAA ENFQEMAALALFNWGNVHMSRARKKIEFKDDDDTSRELILEQINAGFEWTQREYLEAGQRYEEALQIKPDFYEGLLALGQQQFERARLTWYYALSNKVDL STWSYEEVIQLYNSAEQNVDRGLQMWEASQSQRIADLSDRTKIKSVPQGTLLDELFKDTSPEDASKQVKDLKSQMNLLHGTILYERSMMEYRLGIPVWQE CLEVSLDKFQLAGASHTDIAVMMKNHISNDSSMDGLGFKIDEIVEAWNDMNEAKKWQRRVHSFRLEPLLRRRVSKIYHALEVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10008035 [exp]	0	1
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10007734 [exp]	1.0	0.8853
AT1G12450			SNARE associated Golgi protein...		Lus10028900 [exp]	2.4	0.8460
AT4G27020			unknown protein		Lus10032644 [exp]	2.4	0.8433
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10000158 [exp]	2.8	0.8128
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10026626 [exp]	6.3	0.8051
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10037469 [exp]	6.6	0.8047
AT4G11800			Calcineurin-like metallo-phosp...		Lus10021750 [exp]	9.2	0.7921
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10004100 [exp]	9.4	0.8338
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10007094 [exp]	9.5	0.7994
AT4G03020			transducin family protein / WD...		Lus10012779 [exp]	10.1	0.7991

Compare expression of checked genes

Lus10008035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.