Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15740 660 / 0 Leucine-rich repeat family protein (.1) AT4G23840 109 / 6e-25 Leucine-rich repeat (LRR) family protein (.1) AT2G25490 68 / 1e-11 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G27920 62 / 5e-10 F-box family protein (.1) AT1G80570 61 / 1e-09 RNI-like superfamily protein (.1.2.3) AT1G08590 58 / 1e-08 Leucine-rich receptor-like protein kinase family protein (.1) AT5G01720 57 / 2e-08 RNI-like superfamily protein (.1) AT1G75820 57 / 2e-08 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT4G08850 55 / 1e-07 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G75640 54 / 3e-07 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038107 [exp] 973 / 0 AT1G15740 652 / 0.0 Leucine-rich repeat family protein (.1) Lus10025751 [exp] 629 / 0 AT1G15740 660 / 0.0 Leucine-rich repeat family protein (.1) Lus10035912 [exp] 600 / 0 AT1G15740 637 / 0.0 Leucine-rich repeat family protein (.1) Lus10001831 [exp] 118 / 9e-28 AT4G23840 512 / 1e-175 Leucine-rich repeat (LRR) family protein (.1) Lus10002165 [exp] 87 / 8e-18 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10003886 [exp] 79 / 1e-15 AT4G23840 281 / 8e-90 Leucine-rich repeat (LRR) family protein (.1) Lus10030102 [exp] 79 / 3e-15 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10039531 [exp] 59 / 6e-09 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10029628 [exp] 59 / 1e-08 AT1G27180 462 / 1e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G061700 [exp] 816 / 0 AT1G15740 612 / 0.0 Leucine-rich repeat family protein (.1) Potri.001G092000 [exp] 119 / 2e-28 AT4G23840 480 / 7e-164 Leucine-rich repeat (LRR) family protein (.1) Potri.018G118035 [exp] 73 / 4e-13 AT1G07390 465 / 1e-146 receptor like protein 1 (.1.2.3) Potri.018G120827 [exp] 69 / 4e-12 AT1G58190 97 / 4e-21 receptor like protein 9 (.1.2) Potri.018G120700 [exp] 69 / 5e-12 AT1G07390 457 / 8e-144 receptor like protein 1 (.1.2.3) Potri.005G009700 [exp] 67 / 2e-11 AT1G74190 453 / 4e-141 receptor like protein 15 (.1) Potri.005G011600 [exp] 67 / 4e-11 AT1G74190 439 / 1e-135 receptor like protein 15 (.1) Potri.006G068500 [exp] 65 / 9e-11 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G241500 [exp] 65 / 1e-10 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.018G130800 [exp] 64 / 1e-10 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10008036 pacid=23144295 polypeptide=Lus10008036 locus=Lus10008036.g ID=Lus10008036.BGIv1.0 annot-version=v1.0 ATGGGAGGAATTTGCTCGAGGAAGAGAGATCAACGGGTTCTAGATGATGGTATAGCCAACCGAGTGTGTGGAAGGTACGGTAAGAGCGGGAGTTCTAAAT GGCTTCGCAATTCTTCGTTTGGTGGCCATGTTTTTACTGATTGCCAGACAGGAGGCAATTCCCCATCGTTAATGGAACTATGCGTGCACAAAATATGCAA GGAAATTGAAAGGTATAAGTCATTGTCGGTACTTCCTAGGGATATTAGCCAGCAGATATTCAATGAGTTGGTGTTGACACATTGTCTCAACGAGGATTCT CTTCCAGCTTTTGTCGATTGTGCTCTTCAGGATGTTCATTTGGGAGATTATCCTGGGGTGAAGGATAGCTGGTTGGATGTTATATCTTCGCAAGGAACGT CTCTACTTTCTCTAGACCTTTCTGATTCCGAGATTACAGATGCTGGGTTGGCTTGCCTCAAAGATTGTCCAGATCTCCAGGCATTGTCTCTAAATTATTG TGAATATATTACCGAGCATGGGTTGAAACACATCGATGGTCTTACGAACTTGACTTCTTTGAGTTTCAAAAGGAGCAACGCGATTACTGCTGAAGGGATG TGTGCCTTTTCCAACTTGATTAATTTAGAGAAGTTGGACCTGGAGAGATGCTCACAGATTCATGGTGGACTGTTTCATCTAAAAGGATTAACAAAACTGG AGTCTCTTAATATTAGATGCTGTAAATGCATCACAGATCTTGACATGAAGGCTCTCACTGGACTCACTAATCTGAAGGAACTGCAACTATCCAACTGTAG TATCACTGACTTTGGAGTTTCCTTATTGAGAGGTTTAAAGAAGATTGTTATGTTGAACTTGGAAGGTTGTAATGTGACCACTGCATGTTTGGATTCGCTT GCAGAGCTTGCCAGCCTTGCATACCTTAACTTAAGCAGATGTGGCCTATCAGATGAAGGATGTGAGAAGTTTTCAGAGCTGAAGAAGTTGAAGGTTTTGA GTTTGGCATTCAATAACATTACAGATGCTATTCTGGTATATCTAAAAGGCTTAAAAAATTTAGAGAGCTTGAACCTGGATTCTTGTAAGATTCGCAATGA AGGGCTAGTGAATTTGTCTGGACTTCCACTCAAAAGTTTGGAGTTGTCTGATACTGAAGTTGGAAGCAGCGGTCTTCGCCATCTTTCAGGTTTAACTCAA CTTGAGAGCTTAAATCTGTCATTCACCTTGGTAACTGATGGTGGTTTGAGGAGGTTATCCGGGGTGACATCTCTGCGATCACTCAACCTAGACGCCCGCC AGATTACAGATGCTGGACTTGCAGGACTCACAAATCTGACCAGGCTGACACATCTGGATCTTTTTGGAGCTCGCATTTCAGACACGGGAACAAATTACTT GCGACACTTCAAGAATCTGCAATCCTTGGAGATATGTGGCGGAGGAATAACTGATGCTGGAGTAAAGAACATAAAAGATCTTCCGTGCCTAACCGTTTTG AATCTGTCACAGAACAGCAACCTGACAGACAAAACCTTGGAGATGATATCTGGGTTGGAGGAGTTGGTGTCACTCAATGTTTCGAATTCTCTGATAACCA ATAAAGGTCTGCAGCATTTGAAGCCACTGAAGAACCTACGCTCCCTAACCTTGGAGTCATGTAAGGTGACTTCTGCCGAAATAAGGAAGCTTCAGTTGAC TGAACTCCCTGATTTGGTGAGTTTCCGACCAGAATAA
AA sequence Show only first row Show all	>Lus10008036 pacid=23144295 polypeptide=Lus10008036 locus=Lus10008036.g ID=Lus10008036.BGIv1.0 annot-version=v1.0 MGGICSRKRDQRVLDDGIANRVCGRYGKSGSSKWLRNSSFGGHVFTDCQTGGNSPSLMELCVHKICKEIERYKSLSVLPRDISQQIFNELVLTHCLNEDS LPAFVDCALQDVHLGDYPGVKDSWLDVISSQGTSLLSLDLSDSEITDAGLACLKDCPDLQALSLNYCEYITEHGLKHIDGLTNLTSLSFKRSNAITAEGM CAFSNLINLEKLDLERCSQIHGGLFHLKGLTKLESLNIRCCKCITDLDMKALTGLTNLKELQLSNCSITDFGVSLLRGLKKIVMLNLEGCNVTTACLDSL AELASLAYLNLSRCGLSDEGCEKFSELKKLKVLSLAFNNITDAILVYLKGLKNLESLNLDSCKIRNEGLVNLSGLPLKSLELSDTEVGSSGLRHLSGLTQ LESLNLSFTLVTDGGLRRLSGVTSLRSLNLDARQITDAGLAGLTNLTRLTHLDLFGARISDTGTNYLRHFKNLQSLEICGGGITDAGVKNIKDLPCLTVL NLSQNSNLTDKTLEMISGLEELVSLNVSNSLITNKGLQHLKPLKNLRSLTLESCKVTSAEIRKLQLTELPDLVSFRPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15740			Leucine-rich repeat family pro...		Lus10008036 [exp]	0	1
AT1G15740			Leucine-rich repeat family pro...		Lus10038107 [exp]	1.0	0.9836
AT2G24550			unknown protein		Lus10026939 [exp]	2.0	0.9660
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	2.2	0.9643
AT2G37150			RING/U-box superfamily protein...		Lus10040389 [exp]	3.0	0.9665
AT2G37150			RING/U-box superfamily protein...		Lus10023507 [exp]	3.2	0.9701
AT4G27745			Yippee family putative zinc-bi...		Lus10007773 [exp]	3.7	0.9578
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10042969 [exp]	5.5	0.9614
AT1G48790		AMSH1	associated molecule with the S...		Lus10009006 [exp]	6.0	0.9546
AT3G20250		APUM5	pumilio 5 (.1)		Lus10033353 [exp]	6.2	0.9521
AT3G14830			unknown protein		Lus10041938 [exp]	6.9	0.9489

Compare expression of checked genes

Lus10008036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.