Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20350 877 / 0 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G14255 510 / 5e-176 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT4G24630 95 / 9e-21 DHHC-type zinc finger family protein (.1) AT5G50020 93 / 8e-20 DHHC-type zinc finger family protein (.1.2) AT5G41060 91 / 2e-19 DHHC-type zinc finger family protein (.1.2) AT3G26935 91 / 2e-19 DHHC-type zinc finger family protein (.1) AT3G56930 91 / 5e-19 DHHC-type zinc finger family protein (.1.2) AT3G48760 89 / 1e-18 DHHC-type zinc finger family protein (.1) AT5G05070 85 / 3e-17 DHHC-type zinc finger family protein (.1) AT3G04970 79 / 7e-16 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038108 [exp] 960 / 0 AT5G20350 839 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10012455 [exp] 520 / 8e-180 AT2G14255 597 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10020505 [exp] 314 / 4e-101 AT2G14255 389 / 2e-131 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10022451 [exp] 96 / 8e-21 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 94 / 4e-20 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10010447 [exp] 92 / 3e-19 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2) Lus10012096 [exp] 91 / 4e-19 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10020844 [exp] 90 / 5e-19 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2) Lus10032009 [exp] 90 / 6e-19 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G121200 [exp] 951 / 0 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.006G061800 [exp] 944 / 0 AT5G20350 959 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.001G287000 [exp] 570 / 0 AT2G14255 671 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.016G025100 [exp] 105 / 1e-23 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.006G027400 [exp] 101 / 2e-22 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.007G077000 [exp] 99 / 2e-22 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 96 / 7e-21 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 95 / 1e-20 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.006G027500 [exp] 92 / 8e-20 AT5G05070 456 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 92 / 1e-19 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0465 [flax] [poplar] PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10008037 pacid=23144291 polypeptide=Lus10008037 locus=Lus10008037.g ID=Lus10008037.BGIv1.0 annot-version=v1.0 ATGTCGTCGGAGATCGAAGTAGTGGAGGAGGTTGTTGTTAATTCCGCCAATCACGCGGGGATTGCTGCTTCTTCTGCCAATGGCGGGGGAGAAAACGTTG CTGGAGACGAGAGCCTCAGGAATGACGTCTACACTGCTGCGGCATACGGGGATTTGGAGAAGCTGCAGAGATTGGTGGAGAGTGAGGGTTGCTCCGTCTC CGAGCCCGATGGGCTTGGTTACTTTGCTCTTCAGTGGGCGGCGCTGAATAATCGGACTGCTGCTGCTCAGTATATCATCGAGCACGGAGGAGATGTCAAT GTAACGGATCACACGGGTCAGACGGCACTTCATTGGAGTGCAGTTCGGGGCGCAATCCAAGTTTCGGAACTTCTACTACAAGAGGGTGCTCGAGTTAATG CTGCTGATATGTATGGTTATCAGACTACACATGTTGCAGCACAATATGGCCAGACAGCTTTCCTGTATCATGTCGTCTCAAAATGGAATGCAGATCCTGA TATTCCTGATAATGATGGAAGAAGTCCCTTGCATTGGGGACGGCAAGATAAAGAAGGTTGCACTCCTCTCCACTGGGCTGCAATAAGGGGTAACTTGGAG GCATGCACTGTGTTAGTACTAGCTGGCAAGAAGGAGGACTTAGTCATCACAGATAACACGGGGATGACTCCAGCGCAACTTGCTTCTGACAAGAACCACA GACAAGTTGCTTTTTTCCTTGGAAATGCTAGAAGGCTGCTTGATAGACGCTGTGATAGCACCAGCCGGTTGGGACGTCTGTCAAAGTTAGGGCTTGCTCC TGTGCTTTGGTGTATAATTATTATTCTTTTGATCATCTATATCCATTCAGTCATCATGGCTGAAAATTTGCCCAAGCTAACAGCTGGCTTTGGCCTTTTC GCTTGGCTTGGGGTATTTCTTGCAACCAGTGGGCTTGTGGCGTTTTACAGGTGTAGCAGGAAGGATCCAGGATATATTAAAATGAATGTGCATGATCCGC AAAACATGAAAGATGATGAACCTCTTCTGAAAATCGAGATAAATAATCCTGCATTGATTTCTGGGAATTGGGCTCAGCTATGTCCAACATGCAAGATTGT AAGACCTCTTCGTGCTAAGCACTGTTCCACATGTGATCGCTGTGTTGAACAATTTGACCATCATTGTCCGTGGGTGTCAAATTGCATAGGCAAGAAAAAC AAGTGGGAGTTCTTTTTATTTCTTCTCTTAGAAGTCTCTGCAATGTTATTAACTGGTGGCGTGGCTCTCACAAGAATATTGTCGGATCCTGTGGCTCCAT CAACATTTGGAGGATGGTTAAATTATTCTGCTACTCATCACGGTGGCGCCATAAGTTTTCTGGTGGCGGACTTTTTCCTCTTCTTTGGTGTCGCTGTTCT AACTATTGTGCAAGCTTCTCAGATATCCCGCAACATAACAACAAACGAGATGGCAAACGCGATGCGTTACAGCTACCTAAAAGGCCCAGGAGGTCGGTTC AGGAACCCCTACGATCATGGATGCAGGAAGAACTGCTCGGATTTCCTAATCTCCGGCTACAACGTAGATGTTGAGTTTGTGGAGGAAGAATCCCCGCAGG CAGAAGGGATTGGAATGATGCAGATGACGAGACACTCAACTGCCCAAAATGGGGAAGCCCAGATCCCGCATCATGCTGCCAATGGGAACGGCCATGTCGC CATCAATGTAAACAACAACTATCAACATGGACATTCTTTGAATTGCAGCCATAGTAGCAGTAGCCAGGCAAAATGTAAAACAGAAAAGGTACCTTTGGGT TTAGGGCTTGGTATTGGCAGGAATGGAGCCCGTTGTTAA
AA sequence Show only first row Show all	>Lus10008037 pacid=23144291 polypeptide=Lus10008037 locus=Lus10008037.g ID=Lus10008037.BGIv1.0 annot-version=v1.0 MSSEIEVVEEVVVNSANHAGIAASSANGGGENVAGDESLRNDVYTAAAYGDLEKLQRLVESEGCSVSEPDGLGYFALQWAALNNRTAAAQYIIEHGGDVN VTDHTGQTALHWSAVRGAIQVSELLLQEGARVNAADMYGYQTTHVAAQYGQTAFLYHVVSKWNADPDIPDNDGRSPLHWGRQDKEGCTPLHWAAIRGNLE ACTVLVLAGKKEDLVITDNTGMTPAQLASDKNHRQVAFFLGNARRLLDRRCDSTSRLGRLSKLGLAPVLWCIIIILLIIYIHSVIMAENLPKLTAGFGLF AWLGVFLATSGLVAFYRCSRKDPGYIKMNVHDPQNMKDDEPLLKIEINNPALISGNWAQLCPTCKIVRPLRAKHCSTCDRCVEQFDHHCPWVSNCIGKKN KWEFFLFLLLEVSAMLLTGGVALTRILSDPVAPSTFGGWLNYSATHHGGAISFLVADFFLFFGVAVLTIVQASQISRNITTNEMANAMRYSYLKGPGGRF RNPYDHGCRKNCSDFLISGYNVDVEFVEEESPQAEGIGMMQMTRHSTAQNGEAQIPHHAANGNGHVAINVNNNYQHGHSLNCSHSSSSQAKCKTEKVPLG LGLGIGRNGARC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10008037 [exp]	0	1
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10038108 [exp]	1.0	0.9183
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Lus10005205 [exp]	2.4	0.8846
AT5G37830		OXP1	oxoprolinase 1 (.1)		Lus10024411 [exp]	4.0	0.8918
AT5G22040			unknown protein		Lus10008373 [exp]	4.0	0.9060
AT1G11480			eukaryotic translation initiat...		Lus10039708 [exp]	6.5	0.8987
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Lus10017530 [exp]	7.9	0.8595
AT5G50970			transducin family protein / WD...		Lus10043205 [exp]	9.2	0.8681
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10022886 [exp]	9.7	0.8515
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10040030 [exp]	11.7	0.8434
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10022885 [exp]	13.6	0.8552

Compare expression of checked genes

Lus10008037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.