Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G34940 644 / 0 ATGUS3 glucuronidase 3 (.1.2.3) AT5G07830 486 / 1e-167 ATGUS2 glucuronidase 2 (.1) AT5G61250 480 / 2e-165 ATGUS1 glucuronidase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038109 [exp] 983 / 0 AT5G34940 678 / 0.0 glucuronidase 3 (.1.2.3) Lus10008823 [exp] 835 / 0 AT5G34940 677 / 0.0 glucuronidase 3 (.1.2.3) Lus10001923 [exp] 514 / 1e-179 AT5G34940 535 / 0.0 glucuronidase 3 (.1.2.3) Lus10015737 [exp] 496 / 1e-171 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10003468 [exp] 494 / 6e-171 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10021652 [exp] 470 / 3e-161 AT5G07830 722 / 0.0 glucuronidase 2 (.1) Lus10037110 [exp] 465 / 1e-159 AT5G07830 528 / 0.0 glucuronidase 2 (.1) Lus10034707 [exp] 464 / 2e-159 AT5G07830 720 / 0.0 glucuronidase 2 (.1) Lus10036963 [exp] 456 / 4e-156 AT5G07830 524 / 0.0 glucuronidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G062200 [exp] 759 / 0 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G121500 [exp] 744 / 0 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G024200 [exp] 625 / 0 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3) Potri.010G160800 [exp] 481 / 7e-166 AT5G61250 561 / 0.0 glucuronidase 1 (.1.2) Potri.015G049100 [exp] 457 / 2e-156 AT5G07830 731 / 0.0 glucuronidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF03662 [flax] [poplar] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008038 pacid=23144288 polypeptide=Lus10008038 locus=Lus10008038.g ID=Lus10008038.BGIv1.0 annot-version=v1.0 ATGGGTTCTCAGATTCTGGTTGTGGGTTTTCTTGTTGTGGTCTGTATCATTGTTCCGGTGAGTTCACAAGAAAATGTTGTTGAAGAAACTGTTGTGGTTG ATGGCACAACTGTCATTGGAAGAACTGATGAAGATTTCATCTGTGCCACTTTGGATTGGTGGCCTCCTGAGAAATGTGACTATGGCACTTGCGCCTGGGA TCATACTTCTCTTATCAATCTCGATCTCAATGACCAAATTCTGCTCAAGGCCATAAAAGCTTTTTCACCATTGAAGATCAGGTTGGGAGGGACATTGCAA GATAAAGTCTTATACGACACACCAGACAACCACCAGCCTTGTGCTCAGTTTGTGAAGAACACAAGTGAGCTCTTTGGTTTCACTCAAGGTTGTTTGCCAA TGTACAGATGGGATGAATTGAATTCATTCTTCACCAAATCTGGGGCTAAGATCATATTTGGACTGAATGCTTTAATGGGGAGGACCATTCAGCCAGATGG TTCTGCAGCTGGTCCTTGGAACTATTCAAATGCTCAATCTTTTATTACCTATTCAGTTCGACACAATTACTCTATTCATGGCTGGGAGCTTGGAAATGAG TTGAGTGGAAGTGGAGTGGGAACCAGAGTTCCAGCAGATCAGTATGCTTCTGATACAATATCCCTGCACGACATTGTGGATAACGTTTACAGTGGCATTG AACAAAAACCACTTGTTCTGGCGCCTGCTGGATTCTATGACTCAAATTGGTTCAGGACATTGATAGACAAAGCAGGAAGTTCTCTGGATGTTGTCACTCA CCACATCTACAATCTTGGTCCAGGAGTAGACGCGCATCTGGTAGAGAAGATTCTTAACCCAGCAGTTCTTGACAATGTGGTTGGTGCATTCCGAGGCCTA CAGAGCCTCCTCAGGATCTCTCAATCTTCAGCAACTGCATGGGTTGGTGAGGCTGGAGGTGCTTACAACAGCGGTCGCAACCTAGTCTCAAATGCATTTG TCTATAGCTTTTGGTACCTGGATCAGCTTGGACTTGCGGCTGCACATGACACCAAAACTTACTGCAGACAGTCGCTGATTGGAGGCAACTATGGCCTGCT CAACACCACCACATATGTGCCAAACCCTGACTATTACAGCGCTCTTCTTTGGCATCGATTGATGGGGCGTAACTCTTTGTCAACGAGCTTTTCTGGATCG AATAAGCTACGTGTGTATGCTCACTGTGCAAAATATTCTAAAAGTTTTGTGTTGTTGCTAATTAACCTGGACAACAGCACAAAATTTGATGTCAACGTAG GACTTAACACTACCTTGATGCTGCAAAATAAACACAGTCCACACTGGCATCATAATCACAGAACAGAAATCATTCAGCTTCCTCCTCATCGTTCCAAGAA TGGTCAAATGAGAGATGAATACCATCTAACAGCGGAAGGTGGAAACTTGCCCAGCCAAACAATGCTACTTAATGGGAAGAGCTTAAAAGTAAATTCAGAT GGAGACATACCTGAATTCGAGCCTTTACATGTAAATTCGTCGGAGCCAATATCTGTAGCTCCTCTATCCATTGTATTTGCTCGTGTTCCATATATTCTCC CTGCTTGCCGGTAG
AA sequence Show only first row Show all	>Lus10008038 pacid=23144288 polypeptide=Lus10008038 locus=Lus10008038.g ID=Lus10008038.BGIv1.0 annot-version=v1.0 MGSQILVVGFLVVVCIIVPVSSQENVVEETVVVDGTTVIGRTDEDFICATLDWWPPEKCDYGTCAWDHTSLINLDLNDQILLKAIKAFSPLKIRLGGTLQ DKVLYDTPDNHQPCAQFVKNTSELFGFTQGCLPMYRWDELNSFFTKSGAKIIFGLNALMGRTIQPDGSAAGPWNYSNAQSFITYSVRHNYSIHGWELGNE LSGSGVGTRVPADQYASDTISLHDIVDNVYSGIEQKPLVLAPAGFYDSNWFRTLIDKAGSSLDVVTHHIYNLGPGVDAHLVEKILNPAVLDNVVGAFRGL QSLLRISQSSATAWVGEAGGAYNSGRNLVSNAFVYSFWYLDQLGLAAAHDTKTYCRQSLIGGNYGLLNTTTYVPNPDYYSALLWHRLMGRNSLSTSFSGS NKLRVYAHCAKYSKSFVLLLINLDNSTKFDVNVGLNTTLMLQNKHSPHWHHNHRTEIIQLPPHRSKNGQMRDEYHLTAEGGNLPSQTMLLNGKSLKVNSD GDIPEFEPLHVNSSEPISVAPLSIVFARVPYILPACR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10008038 [exp]	0	1
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10038109 [exp]	1.0	0.9495
AT2G14530		TBL13	TRICHOME BIREFRINGENCE-LIKE 13...		Lus10012477 [exp]	2.0	0.9363
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037663 [exp]	6.0	0.9130
AT3G53250			SAUR-like auxin-responsive pro...		Lus10009219 [exp]	6.9	0.9286
AT1G06330			Heavy metal transport/detoxifi...		Lus10020704 [exp]	15.0	0.9004
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10042001 [exp]	22.4	0.8724
AT2G02850		ARPN	plantacyanin (.1)		Lus10041850 [exp]	24.7	0.8856
AT1G47870	E2F_DP	ATE2FC, ATE2F2,...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10033151 [exp]	25.2	0.8938
AT5G40850		UPM1	urophorphyrin methylase 1 (.1....		Lus10027819 [exp]	25.7	0.8706
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10025866 [exp]	26.6	0.9069

Compare expression of checked genes

Lus10008038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.