Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20380 365 / 3e-124 PHT4;5 phosphate transporter 4;5 (.1) AT4G00370 146 / 1e-39 PHT4;4, ANTR2 anion transporter 2, Major facilitator superfamily protein (.1) AT2G29650 141 / 9e-39 PHT4;1, ANTR1 anion transporter 1, phosphate transporter 4;1 (.1.2.3) AT2G38060 104 / 7e-25 PHT4;2 phosphate transporter 4;2 (.1) AT5G44370 93 / 4e-21 PHT4;6 phosphate transporter 4;6 (.1) AT3G46980 90 / 1e-19 PHT4;3 phosphate transporter 4;3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038110 [exp] 393 / 9e-135 AT5G20380 662 / 0.0 phosphate transporter 4;5 (.1) Lus10018218 [exp] 151 / 1e-41 AT2G29650 761 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10040686 [exp] 152 / 5e-41 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10014769 [exp] 140 / 1e-36 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10036366 [exp] 138 / 1e-36 AT4G00370 812 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10026551 [exp] 100 / 3e-23 AT5G44370 713 / 0.0 phosphate transporter 4;6 (.1) Lus10013836 [exp] 99 / 5e-23 AT5G44370 714 / 0.0 phosphate transporter 4;6 (.1) Lus10040703 [exp] 97 / 3e-22 AT3G46980 673 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10018203 [exp] 97 / 4e-22 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G121600 [exp] 385 / 2e-131 AT5G20380 654 / 0.0 phosphate transporter 4;5 (.1) Potri.006G062300 [exp] 380 / 8e-130 AT5G20380 636 / 0.0 phosphate transporter 4;5 (.1) Potri.009G043800 [exp] 147 / 3e-40 AT2G29650 778 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.014G085700 [exp] 147 / 7e-40 AT4G00370 841 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Potri.001G249800 [exp] 146 / 8e-40 AT2G29650 773 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.016G111000 [exp] 103 / 2e-24 AT2G38060 687 / 0.0 phosphate transporter 4;2 (.1) Potri.009G168200 [exp] 99 / 5e-23 AT5G44370 676 / 0.0 phosphate transporter 4;6 (.1) Potri.001G248200 [exp] 93 / 9e-21 AT3G46980 675 / 0.0 phosphate transporter 4;3 (.1.2.3) Potri.002G160650 [exp] 49 / 7e-07 AT4G00370 190 / 3e-58 anion transporter 2, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10008039 pacid=23144293 polypeptide=Lus10008039 locus=Lus10008039.g ID=Lus10008039.BGIv1.0 annot-version=v1.0 ATGGTTTTCGTTCAAGAAGAGGAAGAGAAAGAAAGGGTTTACGAGAGAGAGAGTTGGCCGGCGGAGCTGGTAACCCTAGGGTTTCGAATCAGCTCTGATA CCATGTCAAATATTAAGGTGCTACTCTTGGCTCCTCCTCTTATTCAAAATTTTGGTTGGGAAGCTGTATTTTACATATTTGGCTTACTTGGACTAGCCTG GTTTCTAGGATTTCAGTCTTTGGCCGAACAAGAAGCTTCATATGCTGCTGAACCTGCTGCAAATTCTGCTCTCGAGAGTACAAAACCGCAAAATTCTTCC ATTGCGGAGATTGGTGATTCACTGAAGGAGGTGCCATGGAAGGCATTCTTCAAGAGTCCAGCTGTATGGGCAATGATATACGCTCACTTTTGCGGTAGTT GGGGACACTATACATGTTTGTCATGGCTTCCTACTTATTTCAGTGAGGCGCTGGACCTAAACTTGACAGAGGCTGCATGGGTATCCATTCTTCCTCCCTT GGCTTCAGTTTTTGTGACCAACCTCGTGGCACAGCTAGCTGACAAATTGATATCCAGTGGAGTTGAAATCACAGTGGTGCGGAAGTTTTGTCAAACAGTT GCCTTTATGTCTCCTGCTATTTGTATGATCCTTTCTTCATTGGATCTAGGATTACCACCATGGGAAGTTGTGGGGATCCTCAGCACTGGCTTGGCCCTCT CAAGCTTTGCTTTGTCTGGATTGTATTGTACACACCAAGATATCTCCCCTGAATATGCAAGCATACTCCTGGGTATAACCAACACTGTTGGAGCAATCCC TGGAATTGTAGGTGTTGTCTTGACTGGCTACTTACTTGATGCAACTCATTCATGGAGTATATCATTGTTTGCTCCATCCATCTTCTTCTACTTGACCGGC ACAGTTATATGGTTGGTATTTGCTAGTAGTAAGCCACAAAACTTCTCTAGCTGA
AA sequence Show only first row Show all	>Lus10008039 pacid=23144293 polypeptide=Lus10008039 locus=Lus10008039.g ID=Lus10008039.BGIv1.0 annot-version=v1.0 MVFVQEEEEKERVYERESWPAELVTLGFRISSDTMSNIKVLLLAPPLIQNFGWEAVFYIFGLLGLAWFLGFQSLAEQEASYAAEPAANSALESTKPQNSS IAEIGDSLKEVPWKAFFKSPAVWAMIYAHFCGSWGHYTCLSWLPTYFSEALDLNLTEAAWVSILPPLASVFVTNLVAQLADKLISSGVEITVVRKFCQTV AFMSPAICMILSSLDLGLPPWEVVGILSTGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAIPGIVGVVLTGYLLDATHSWSISLFAPSIFFYLTG TVIWLVFASSKPQNFSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008039 [exp]	0	1
AT2G20830			transferases;folic acid bindin...		Lus10018558 [exp]	5.7	0.8261
AT5G04440			Protein of unknown function (D...		Lus10038659 [exp]	7.3	0.8352
AT5G59400			unknown protein		Lus10016531 [exp]	11.1	0.8200
AT4G03200			catalytics (.1.2)		Lus10003165 [exp]	11.6	0.7803
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10013576 [exp]	12.4	0.7768
AT1G75100		JAC1	J-domain protein required for ...		Lus10018811 [exp]	13.1	0.8057
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Lus10031190 [exp]	20.4	0.7653
AT3G02060			DEAD/DEAH box helicase, putati...		Lus10041506 [exp]	22.2	0.7822
AT5G15410		ATCNGC2, DND1	DEFENSE NO DEATH 1, CYCLIC NUC...		Lus10030698 [exp]	24.5	0.7544
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10015345 [exp]	28.5	0.7624

Compare expression of checked genes

Lus10008039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.