Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20380 258 / 2e-83 PHT4;5 phosphate transporter 4;5 (.1) AT2G29650 128 / 2e-34 PHT4;1, ANTR1 anion transporter 1, phosphate transporter 4;1 (.1.2.3) AT4G00370 122 / 9e-32 PHT4;4, ANTR2 anion transporter 2, Major facilitator superfamily protein (.1) AT2G38060 100 / 4e-24 PHT4;2 phosphate transporter 4;2 (.1) AT3G46980 95 / 4e-22 PHT4;3 phosphate transporter 4;3 (.1.2.3) AT5G44370 89 / 4e-20 PHT4;6 phosphate transporter 4;6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038110 [exp] 416 / 7e-145 AT5G20380 662 / 0.0 phosphate transporter 4;5 (.1) Lus10018218 [exp] 137 / 4e-37 AT2G29650 761 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10040686 [exp] 138 / 9e-37 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10036366 [exp] 130 / 3e-34 AT4G00370 812 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10035532 [exp] 105 / 1e-25 AT2G38060 669 / 0.0 phosphate transporter 4;2 (.1) Lus10040703 [exp] 96 / 3e-22 AT3G46980 673 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10018203 [exp] 95 / 7e-22 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10013836 [exp] 87 / 2e-19 AT5G44370 714 / 0.0 phosphate transporter 4;6 (.1) Lus10026551 [exp] 86 / 1e-18 AT5G44370 713 / 0.0 phosphate transporter 4;6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G121600 [exp] 291 / 1e-95 AT5G20380 654 / 0.0 phosphate transporter 4;5 (.1) Potri.006G062300 [exp] 284 / 4e-93 AT5G20380 636 / 0.0 phosphate transporter 4;5 (.1) Potri.001G249800 [exp] 134 / 5e-36 AT2G29650 773 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.014G085700 [exp] 127 / 3e-33 AT4G00370 841 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Potri.009G043800 [exp] 125 / 5e-33 AT2G29650 778 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.016G111000 [exp] 99 / 1e-23 AT2G38060 687 / 0.0 phosphate transporter 4;2 (.1) Potri.001G248200 [exp] 95 / 5e-22 AT3G46980 675 / 0.0 phosphate transporter 4;3 (.1.2.3) Potri.009G168200 [exp] 67 / 2e-12 AT5G44370 676 / 0.0 phosphate transporter 4;6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10008040 pacid=23144287 polypeptide=Lus10008040 locus=Lus10008040.g ID=Lus10008040.BGIv1.0 annot-version=v1.0 ATGGCGAAATTTAGTCTCAAAGCTGACCACTTTTGCTCTCTTTCTCAAACTAAGCTCAGGAATTCTTCCACCTTCAGGAAGAACTCGTTCGGAAGAGGGG GATTTCAAGGTTTTCAGACGACACCCTCTTTAAAGTTTCGTGCTTTTTGTACTATTAGAGGGAAAGAGGATGTGAAGGATGGGGAGAAGAGGGTTCCAGT TGTTGCTCCTCTTCAGGGAGTAAATGGACGAGTCCAGCGACTTGCTGAGTTTGAACAGAGGAGACTCGATGAAGGTAAAGAGGGGTTTGATTGGAATTGG CCGCTGTGGAACAATCTGCCTCAGAGATATAAGCTTATTGGCACTACTTCGCTTGCCTTTGTTATTTGTAACATGGATAAGGTTAACTTGAGTGTTGCTA TAATTCCAATGTCACACCAGTTTGGGTGGAATTCTTCAGTCGCTGGATTAGTGCAATCTTCCTTCTTTTGGGGTTATGCTTTGAGCCAGTTGCCTGGAGG TTGGCTTTCCAAGATATTTGGCGGCAGAAAAGTCCTTCAGATTGGAGTGTTGACTTGGTCAATAGCTACAGCATTGGTCCCTTTGCTTGCCGGATCCATG CCTGGACTTGTATTCTCTAGGATTTTGGTTGGTATAGGAGAAGGCGTTTCCCCATCAGCTGCAACTGACCTTATTGCCAGGCATGTCAATGCCTGTACAA GAACGAACACGGGCTGTAGCATTTGTCTTTGGTGGACTAAGTGTGGGAAGTGTAACCGGGTAAAACGTCCTGACACAGATTAA
AA sequence Show only first row Show all	>Lus10008040 pacid=23144287 polypeptide=Lus10008040 locus=Lus10008040.g ID=Lus10008040.BGIv1.0 annot-version=v1.0 MAKFSLKADHFCSLSQTKLRNSSTFRKNSFGRGGFQGFQTTPSLKFRAFCTIRGKEDVKDGEKRVPVVAPLQGVNGRVQRLAEFEQRRLDEGKEGFDWNW PLWNNLPQRYKLIGTTSLAFVICNMDKVNLSVAIIPMSHQFGWNSSVAGLVQSSFFWGYALSQLPGGWLSKIFGGRKVLQIGVLTWSIATALVPLLAGSM PGLVFSRILVGIGEGVSPSAATDLIARHVNACTRTNTGCSICLWWTKCGKCNRVKRPDTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008040 [exp]	0	1
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10038110 [exp]	2.0	0.8946
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020485 [exp]	2.2	0.9158
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10003599 [exp]	7.5	0.8937
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10006036 [exp]	8.1	0.8781
AT1G76050			Pseudouridine synthase family ...		Lus10017250 [exp]	8.9	0.8895
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Lus10024748 [exp]	10.2	0.8719
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036543 [exp]	11.2	0.8671
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10019386 [exp]	11.7	0.8703
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10019877 [exp]	12.7	0.8720
AT1G18160			Protein kinase superfamily pro...		Lus10038955 [exp]	13.9	0.8213

Compare expression of checked genes

Lus10008040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.