Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22400 152 / 1e-43 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 141 / 8e-40 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT1G67560 96 / 1e-23 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 89 / 2e-21 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G72520 88 / 6e-21 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT3G45140 86 / 3e-20 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004915 [exp] 213 / 3e-65 AT3G22400 1289 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10001465 [exp] 144 / 7e-41 AT1G55020 1162 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10031505 [exp] 137 / 2e-38 AT1G55020 1237 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10015184 [exp] 136 / 5e-38 AT1G55020 1245 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10008202 [exp] 136 / 6e-38 AT1G55020 1100 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10025857 [exp] 107 / 1e-27 AT3G22400 809 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10006429 [exp] 100 / 3e-25 AT1G67560 1034 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10027379 [exp] 97 / 4e-24 AT1G72520 867 / 0.0 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10031809 [exp] 95 / 2e-23 AT3G45140 753 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089500 [exp] 184 / 4e-55 AT3G22400 1267 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.008G151500 [exp] 182 / 3e-54 AT3G22400 1274 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.005G032400 [exp] 165 / 4e-48 AT1G55020 1308 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032700 [exp] 164 / 5e-48 AT1G55020 1307 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032600 [exp] 163 / 2e-47 AT1G55020 1284 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.013G022000 [exp] 159 / 6e-46 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.013G022100 [exp] 155 / 7e-45 AT1G55020 1241 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032800 [exp] 145 / 3e-41 AT1G55020 1240 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.014G177200 [exp] 108 / 4e-28 AT3G22400 786 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G015400 [exp] 105 / 3e-27 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase
Representative CDS sequence Show only first row Show all	>Lus10008041 pacid=23144278 polypeptide=Lus10008041 locus=Lus10008041.g ID=Lus10008041.BGIv1.0 annot-version=v1.0 ATGAAAGAGAAACCATTGTGGCCAGAGATGCAAAATTTCCACGACCTAACACAATCATGCACCATCATCATATGGGTGGCTTCAGCGCTCCACGCAGCGG TGAATTTCAGGCAATATCCTTACGCTGGATACCTCCCGAACCGTCCCACCATTAGCCGGCGGTTCATGCCGGAGCTAGGGATATCACTCACTAATTCGCT ATCAAGGCATTCAACTGACGAGATTTACCTTGGCCAGCGAGAAATAGTGGAGCGGACTACAGACGATGAACCACTAGCGGCGTTCAAAAGATTTGGGGAT AAGCTAGTGGAAATTGAGGGGAAAATCATGGAAATGAACAATAACCCTAGATGGAAAAACATGGTATCAACTATCATGATTCTGTTTGGTTTCGGGTGTC GATTCCGCTTCTAG
AA sequence Show only first row Show all	>Lus10008041 pacid=23144278 polypeptide=Lus10008041 locus=Lus10008041.g ID=Lus10008041.BGIv1.0 annot-version=v1.0 MKEKPLWPEMQNFHDLTQSCTIIIWVASALHAAVNFRQYPYAGYLPNRPTISRRFMPELGISLTNSLSRHSTDEIYLGQREIVERTTDDEPLAAFKRFGD KLVEIEGKIMEMNNNPRWKNMVSTIMILFGFGCRFRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10008041 [exp]	0	1
					Lus10017763 [exp]	1.0	0.8438
					Lus10021381 [exp]	3.5	0.8376
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10024671 [exp]	5.6	0.7569
AT4G27300			S-locus lectin protein kinase ...		Lus10037865 [exp]	8.2	0.7481
					Lus10028673 [exp]	8.5	0.8351
AT1G53830		ATPME2	pectin methylesterase 2 (.1)		Lus10027556 [exp]	12.3	0.8329
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10011944 [exp]	14.8	0.7936
					Lus10033534 [exp]	16.6	0.7918
					Lus10039990 [exp]	17.9	0.7918
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10038876 [exp]	19.2	0.7918

Compare expression of checked genes

Lus10008041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.