Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15690 398 / 1e-125 FUGU5, AtVHP1;1, AVP-3, ATAVP3, AVP1 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) AT1G78920 190 / 4e-50 AtVHP2;1, AVPL1, AVP2 vacuolar H+-pyrophosphatase 2, VACUOLAR-PYROPHOSPHATASE LIKE PROTEIN 1, vacuolar H+-pyrophosphatase 2, vacuolar H+-pyrophosphatase 2 (.1), vacuolar H+-pyrophosphatase 2 (.2) AT1G16780 189 / 2e-49 AtVHP2;2, AVPL1 Inorganic H pyrophosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008044 [exp] 419 / 2e-137 AT1G15690 561 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10038114 [exp] 419 / 2e-135 AT1G15690 1170 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10038111 [exp] 420 / 1e-133 AT1G15690 1385 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008828 [exp] 405 / 3e-129 AT1G15690 697 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10039977 [exp] 405 / 4e-128 AT1G15690 1381 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10034800 [exp] 197 / 2e-52 AT1G16780 1434 / 0.0 Inorganic H pyrophosphatase family protein (.1) Lus10033345 [exp] 130 / 1e-30 AT1G16780 1174 / 0.0 Inorganic H pyrophosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G063000 [exp] 409 / 9e-130 AT1G15690 1336 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.018G119500 [exp] 406 / 2e-128 AT1G15690 1367 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.013G009400 [exp] 390 / 9e-123 AT1G15690 1237 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.005G018700 [exp] 390 / 1e-122 AT1G15690 1248 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.010G254200 [exp] 193 / 5e-51 AT1G16780 1266 / 0.0 Inorganic H pyrophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03030 [flax] [poplar] H_PPase Inorganic H+ pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10008042 pacid=23144283 polypeptide=Lus10008042 locus=Lus10008042.g ID=Lus10008042.BGIv1.0 annot-version=v1.0 ATGGGCGCGTCCATTCTGCCAGATCTCGGCACTGAGATACTGATTCCAGTATGCGCCGTCATCGGAATCGTGTTTGCTCTATTCCAGTGGTGGCTCGTCT CGGCGGTCAAGATGACTCCTGGCGCGGCCACCAGCAGCGGAGGAGGGAAGAACGGCTACTCCGACTATCTGATTGAAGAGGAAGAGGGTGTGAATGACCA CAGCGTCGTTTCCAAATGCGCCGAGATTCAAAACGCCATTTCTGAGGGTGCTACCTCTTTCCTTTTCACCGAGTACAAGTATGTTGGCATCTTCATGGTT GCCTTTGCTGTCCTCATCTTCGTCTTCTTGGGATCTGTCGAGGGATTCAGCACGAGTTATCAGGTTTGCACCTATGATGCACAGAAGATGTGCAAGCCTG CCCTGGCTACTGCTGGGTTCAGCACCATAGCTTTCATGCTCGGTGCTGTCACTTCTGTGGTGTCTGGTTTCCTTGGCATGAAAATTGCTACCTATGCAAA TGCTAGAACTACTCTTGAGGCAAGGAAAGGAGTCGGGAAGGCTTTCATCATAGCTTTCAGATCTGGTGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCAGCAGCCCTGGTATCACTGGCTCTATTTGGTGCCTTTGTGAGCCGTG CATCTATTTCAACGGTTGATGTGTTGACCCCGAAAGTTTTCATTGGTTTGCTTGTTGGAGCTATGCTCCCTTACTGGTTCTCTGCGATGACGATGAAGAG CGTAGGAAGTGCAGCACTGAAGATGGTTGAGGAAGTTAGAAGGCAGTTCAACACAATTCCTGGTCTTATGGAAGGTACTGCCAAGCCTGACTATGCTACC TGTGTGAAGATCTCGACTGACGCTTCCCTCAGAGAAATGATCCCACCTGGTGCACTTGTCATGCTCACTCCTCTCATCGTTGGCATCTTTTTTGGAGTGG AAACTCTCTCTGGTGTCCTTGCTGGATCACTTGTGTCTGGTGTGCAGATTGCTATCTCTGCATCAAACACTGGCGGCGCATGGGACAATGCCAAGAAGTA CATTGAGGCTGGTGTGTCTGAGCACGCGAAATCACTCGGGCCGAAAGGGTCAGACCCACACAAGGCAGCAGTGATTGGTGACACCATTGGAGACCCATTG AAGGACACATCTGGACCGTCACTCAACATCCTCATCAAGCTGATGGCTGTCGAGTCCCTTGTTTTTGCACCATTCTTTGCCACTCACGGTGGCCTGCTCT TCAAGATATGGTGA
AA sequence Show only first row Show all	>Lus10008042 pacid=23144283 polypeptide=Lus10008042 locus=Lus10008042.g ID=Lus10008042.BGIv1.0 annot-version=v1.0 MGASILPDLGTEILIPVCAVIGIVFALFQWWLVSAVKMTPGAATSSGGGKNGYSDYLIEEEEGVNDHSVVSKCAEIQNAISEGATSFLFTEYKYVGIFMV AFAVLIFVFLGSVEGFSTSYQVCTYDAQKMCKPALATAGFSTIAFMLGAVTSVVSGFLGMKIATYANARTTLEARKGVGKAFIIAFRSGAXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXSAALVSLALFGAFVSRASISTVDVLTPKVFIGLLVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYAT CVKISTDASLREMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGVSEHAKSLGPKGSDPHKAAVIGDTIGDPL KDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008042 [exp]	0	1
AT3G03305			Calcineurin-like metallo-phosp...		Lus10026788 [exp]	7.7	0.7948
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10031365 [exp]	11.0	0.8034
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10027159 [exp]	13.0	0.8035
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008044 [exp]	15.3	0.7535
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10036938 [exp]	18.7	0.7819
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10040268 [exp]	21.1	0.8007
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038111 [exp]	25.1	0.7999
AT3G08530			Clathrin, heavy chain (.1)		Lus10028976 [exp]	34.8	0.7930
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009300 [exp]	38.6	0.7912
AT5G64470		TBL12	TRICHOME BIREFRINGENCE-LIKE 12...		Lus10020489 [exp]	38.7	0.7016

Compare expression of checked genes

Lus10008042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.