Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06450 165 / 4e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G61470 158 / 3e-46 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G15920 156 / 2e-45 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT3G44240 152 / 1e-44 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G10960 151 / 1e-43 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 150 / 2e-43 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT2G32070 147 / 3e-42 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G22250 147 / 3e-42 AtCAF1b CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 147 / 6e-42 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27890 143 / 2e-40 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035077 [exp] 541 / 0 AT1G61470 162 / 6e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017905 [exp] 498 / 7e-179 AT1G06450 162 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10001651 [exp] 491 / 3e-175 AT1G61470 167 / 4e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000561 [exp] 448 / 1e-159 AT1G61470 143 / 1e-40 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035078 [exp] 418 / 1e-147 AT1G06450 168 / 2e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000327 [exp] 410 / 2e-144 AT1G06450 174 / 1e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10038113 [exp] 385 / 9e-136 AT3G44240 140 / 3e-41 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017895 [exp] 258 / 8e-87 AT1G06450 98 / 4e-26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10007771 [exp] 248 / 1e-80 AT1G61470 170 / 5e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038700 [exp] 213 / 1e-67 AT1G61470 182 / 8e-56 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 154 / 5e-45 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.001G046700 [exp] 154 / 1e-44 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G020900 [exp] 153 / 2e-44 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G262500 [exp] 151 / 1e-43 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G073000 [exp] 147 / 4e-42 AT3G44260 322 / 5e-111 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 146 / 9e-42 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G205600 [exp] 144 / 1e-40 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 142 / 2e-40 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.004G200400 [exp] 142 / 2e-40 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10008043 pacid=23144282 polypeptide=Lus10008043 locus=Lus10008043.g ID=Lus10008043.BGIv1.0 annot-version=v1.0 ATGGCTTCTTTTGATGTGAGGGAAGTCTGGAACCACAACTTGAATCAAGAATTGTACGCCATGGAAGTGTGTTTGGGTAAATACCCAATTGCGTCAGTGG ACTCTGAATTTCCGGGTTTCCTCCATCCAACGCCGAGGTACGCGTCCGAGGAACTCCGATTTGAGAACTTGAAGTACAACGTCGGCGCAACTTCTCTCAT CCAATTAGGGCTCACTCTCTGTAATTCAAACGGCACCGTCGGCGGCGTCTGGCAGTTCAATTTCCACTTCAACCTAGACCGCGACCTCCACTCCAAAGAT TCAACCGATTTCTTAGCCCTCCACGGTATCGATTTCCAGAAATTGAAAACCCAAGGTGTCGACCGGGCCAAATTCGGTGCCATGTTCGGAGCGGTGATTG GGAGAAGGCGGAGTGCGATTACGTGGGTCACTTTCCACGGAGTTTACGACTACGCCCATTTAGTGAAGGCGGTGACTTTCCGTCCGGTTGCGGAATCATC GGCGGAATTTGTTAATGTTTTGGGGAGAGGGTTTGATTCGGTGGTGGATTGCAAGTATATGGCTAAGTTTTACGAGGAGACAGGGAGTGAAATCGGGCTG CAGAAGTTAGCCGATAATTTGGGGGTGAAGAGAAGAGGGGAAGCTCACACTGCCGCCTCTGATAGTTTGTTGACTGCGCTTGTTTACTTTAAGTTGAAGA ACAAGCTGATGCTATTGGGTGTTGGGGAAGAGACTTATGTTGACTTCGTCTATGGAATTAGCACAAGGATCTCCAGGAAGCAGCAAGAGCACCACTTTGT ACCAACGACTCGACCAGGTATTGTGTATCATCATCATCAGCCTTATCATTTTCATCAGCGGAAGGTGGTGGTGTATCCAATTCCATATCAGCAGCAGAAT GTGATGATGGGTCGTCGTTGGGTTGATTGCTCATTAGCTCCAACAGTATTAGTTCCGTCTTTCATCTACTGA
AA sequence Show only first row Show all	>Lus10008043 pacid=23144282 polypeptide=Lus10008043 locus=Lus10008043.g ID=Lus10008043.BGIv1.0 annot-version=v1.0 MASFDVREVWNHNLNQELYAMEVCLGKYPIASVDSEFPGFLHPTPRYASEELRFENLKYNVGATSLIQLGLTLCNSNGTVGGVWQFNFHFNLDRDLHSKD STDFLALHGIDFQKLKTQGVDRAKFGAMFGAVIGRRRSAITWVTFHGVYDYAHLVKAVTFRPVAESSAEFVNVLGRGFDSVVDCKYMAKFYEETGSEIGL QKLADNLGVKRRGEAHTAASDSLLTALVYFKLKNKLMLLGVGEETYVDFVYGISTRISRKQQEHHFVPTTRPGIVYHHHQPYHFHQRKVVVYPIPYQQQN VMMGRRWVDCSLAPTVLVPSFIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06450			Polynucleotidyl transferase, r...		Lus10008043 [exp]	0	1
AT1G62760			Plant invertase/pectin methyle...		Lus10031132 [exp]	1.0	0.9190
AT3G20390			endoribonuclease L-PSP family ...		Lus10021523 [exp]	1.4	0.9188
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10020267 [exp]	3.2	0.8895
AT5G56110	MYB	MS188, ATMYB80,...	MALE STERILE 188, ARABIDOPSIS ...		Lus10008353 [exp]	5.3	0.8819
AT1G31335			unknown protein		Lus10038328 [exp]	6.2	0.9090
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10002442 [exp]	7.4	0.8837
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10036045 [exp]	7.5	0.8879
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10036723 [exp]	7.7	0.8829
AT3G53730			Histone superfamily protein (....		Lus10004949 [exp]	8.1	0.8894
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	8.7	0.8955

Compare expression of checked genes

Lus10008043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.