Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15690 560 / 0 FUGU5, AtVHP1;1, AVP-3, ATAVP3, AVP1 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) AT1G78920 275 / 8e-84 AtVHP2;1, AVPL1, AVP2 vacuolar H+-pyrophosphatase 2, VACUOLAR-PYROPHOSPHATASE LIKE PROTEIN 1, vacuolar H+-pyrophosphatase 2, vacuolar H+-pyrophosphatase 2 (.1), vacuolar H+-pyrophosphatase 2 (.2) AT1G16780 275 / 2e-83 AtVHP2;2, AVPL1 Inorganic H pyrophosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038111 [exp] 582 / 0 AT1G15690 1385 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10038114 [exp] 581 / 0 AT1G15690 1170 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10039977 [exp] 566 / 0 AT1G15690 1381 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008828 [exp] 564 / 0 AT1G15690 697 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008042 [exp] 441 / 3e-146 AT1G15690 422 / 1e-134 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10034800 [exp] 282 / 1e-86 AT1G16780 1434 / 0.0 Inorganic H pyrophosphatase family protein (.1) Lus10033345 [exp] 198 / 2e-55 AT1G16780 1174 / 0.0 Inorganic H pyrophosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G063000 [exp] 570 / 0 AT1G15690 1336 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.018G119500 [exp] 570 / 0 AT1G15690 1367 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.013G009400 [exp] 552 / 0 AT1G15690 1237 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.005G018700 [exp] 551 / 0 AT1G15690 1248 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.010G254200 [exp] 278 / 3e-85 AT1G16780 1266 / 0.0 Inorganic H pyrophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03030 [flax] [poplar] H_PPase Inorganic H+ pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10008044 pacid=23144281 polypeptide=Lus10008044 locus=Lus10008044.g ID=Lus10008044.BGIv1.0 annot-version=v1.0 ATGGGCGCGTCCATTCTGCCAGATCTCGGCACTGAGATACTGATTCCAGTATGCGCCGTCATCGGAATCGTGTTTGCTCTATTCCAGTGGTGGCTCGTCT CGGCGGTCAAGATGACTCCTGGCGCGGCCACCAGCAGCGGAGGAGGGAAGAACGGCTACTCCGACTATCTGATTGAAGAGGAAGAGGGTGTGAATGACCA CAGCGTCGTTTCCAAATGCGCCGAGATTCAAAACGCCATTTCTGAGGGTGCTACCTCTTTCCTTTTCACCGAGTACAAGTATGTTGGCATCTTCATGGTT GCCTTTGCTGTCCTCATCTTCGTCTTCTTGGGATCTGTCGAGGGATTCAGCACGAGTTATCAGGTTTGCACCTATGATGCACAGAAGATGTGCAAGCCTG CCCTGGCTACTGCTGGGTTCAGCACCATAGCTTTCATGCTCGGTGCTGTCACCTCTAAGTCTTGTCTTGGTTTCATCCAACTTGCAGCCCTGTTCAAGAT GTTGCTGATTCTTGTCGAACTGGAGCAGCCACCAACTTTTGCTGCAATGTACGGCATAGCAGTAGCTGCCCTTGGAATGCTGAGCACCATTGCCACTGGA TTAGCCATTGATGCATATGGTCCCATTAGTGACAATGCTGGAGGTATCGCTGAGATGGCAGGAATGAGCCACAGGATCCGGGAGAGAACTGATGCCCTTG ATGCTGCCGGGAACACCACTGCTGCTATTGGCAAGGGTTTCGCTATTGGTTCGGCAGCCCTGGTATCACTGGCTCTATTTGGTGCCTTTGTGAGCCGTGC ATCTATTTCAACGGTTGATGTGTTGACCCCGAAAGTTTTCATTGGTTTGCTTGTTGGAGCTATGCTCCCTTACTGGTTCTCTGCGATGACGATGAAGAGC GTAGGAAGTGCAGCACTGAAGATGGTTGAGGAAGTTAGAAGGCAGTTCAACACAATTCCTGGTCTTATGGAAGGTACTGCCAAGCCTGACTATGCTACCT GTGTGAAGATCTCGACTGACGCTTCCCTCAGAGAAATGATCCCACCTGGTGCACTTGTCATGCTCACTCCTCTCATCGTTGGCATCTTTTTTGGAGTGGA AACTCTCTCTGGTGTCCTTGCTGGATCACTTGTGTCTGGTGTGCAGATTGCTATCTCTGCATCAAACACTGGCGGCGCATGGGACAATGCCAAGAAGTAC ATTGAGGCTGGTGTGTCTGAGCACGCGAAATCACTCGGGCCGAAAGGGTCAGACCCACACAAGGCAGCAGTGATTGGTGACACCATTGGAGACCCATTGA AGGACACATCTGGACCGTCACTCAACATCCTCATCAAGCTGATGGCTGTCGAGTCCCTTGTTTTTGCACCATTCTTTGCCACTCACGGTGGCCTGCTCTT CAAGATATGGTGA
AA sequence Show only first row Show all	>Lus10008044 pacid=23144281 polypeptide=Lus10008044 locus=Lus10008044.g ID=Lus10008044.BGIv1.0 annot-version=v1.0 MGASILPDLGTEILIPVCAVIGIVFALFQWWLVSAVKMTPGAATSSGGGKNGYSDYLIEEEEGVNDHSVVSKCAEIQNAISEGATSFLFTEYKYVGIFMV AFAVLIFVFLGSVEGFSTSYQVCTYDAQKMCKPALATAGFSTIAFMLGAVTSKSCLGFIQLAALFKMLLILVELEQPPTFAAMYGIAVAALGMLSTIATG LAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRASISTVDVLTPKVFIGLLVGAMLPYWFSAMTMKS VGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASLREMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKY IEAGVSEHAKSLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008044 [exp]	0	1
AT1G54220			Dihydrolipoamide acetyltransfe...		Lus10006877 [exp]	1.0	0.8548
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10020351 [exp]	3.7	0.8333
AT5G64460			Phosphoglycerate mutase family...		Lus10032819 [exp]	5.5	0.7888
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10009531 [exp]	8.0	0.7972
AT5G35840		PHYC	phytochrome C (.1)		Lus10012342 [exp]	12.0	0.7453
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008042 [exp]	15.3	0.7535
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038114 [exp]	16.9	0.8186
AT1G11390			Protein kinase superfamily pro...		Lus10002591 [exp]	22.0	0.7136
AT2G34250			SecY protein transport family ...		Lus10031399 [exp]	39.5	0.7466
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10004100 [exp]	43.5	0.7574

Compare expression of checked genes

Lus10008044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.