Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09280 712 / 0 unknown protein AT2G40760 97 / 3e-21 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT1G17850 72 / 3e-13 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2) AT4G24380 62 / 1e-10 unknown protein AT5G65400 62 / 2e-10 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029020 [exp] 96 / 5e-21 AT2G40760 568 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10041981 [exp] 74 / 1e-13 AT1G17850 503 / 1e-176 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2) Lus10020946 [exp] 66 / 7e-12 AT4G24380 327 / 1e-114 unknown protein Lus10017986 [exp] 67 / 2e-11 AT1G17850 496 / 7e-174 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2) Lus10008722 [exp] 65 / 2e-11 AT4G24380 320 / 7e-112 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G011300 [exp] 797 / 0 AT1G09280 773 / 0.0 unknown protein Potri.019G059400 [exp] 94 / 5e-20 AT2G40760 553 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G029600 [exp] 77 / 1e-14 AT1G17850 528 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2) Potri.002G102500 [exp] 68 / 8e-13 AT4G24380 334 / 1e-117 unknown protein Potri.006G027000 [exp] 53 / 2e-07 AT4G24380 211 / 4e-68 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03959 [flax] [poplar] FSH1 Serine hydrolase (FSH1)
Representative CDS sequence Show only first row Show all	>Lus10008045 pacid=23144292 polypeptide=Lus10008045 locus=Lus10008045.g ID=Lus10008045.BGIv1.0 annot-version=v1.0 ATGGAAGAGAGCAAAGAGCAGAAGCGACTAGAAGAGGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAGGATCCATACGGTATCCTTCTCTACTACA GATACACTTCAATCCCCGATCTCAACTCCCTGCTTTCCTTCTACCACCATAACTGCAACTCTCTCTCCCTCCTCGGCCGCGTACGCCTCTCCTCTAACGG CGTCAATGTTACAGTTGGTGGCAAATTGTCTTGCTTGAAGAAGCACATAGTCGCACTCAAGTCCCATCACCCTTGCTTTCAACAAGGGACCGACTTCAAG CTCGCTTCTTGCGACTTCCCACCATTCAATGATCACGTTGTTGCCCGTGAAGTCGGTTTCACTTCTCTCTCCATTCGCATTGTTAAGGAGTTGGTCACGT TTAGCTCTAGTCCACTATTGAAGCCCCCTGATATTGCCAATGCTGGCACACATCTATCTGCTTCTGAGTTTCATTCACTTCTTCATAGTGCTGCTGGTAA TGATAGTAAGGAAATTGTTCTGCTGGATGCTAGAAATTTGTACGAAACAAGAATTGGAAAGTTTGATACTCCTTGTGTGGAAACTCTGGATCCACAGATC AGGCAATATAGTGATCTCCCCTCCTGGATAGATGATCATTCTGAACAACTGCGAGGTCGAAATGTTCTCATGTATTGCACTGGTGGAATTAGGTGTGAGA TGGCATCTGCATATATTAAATCAAAAGGCGCTGGCTTTGAGAATGTGTTTCAGTTATTTGGTGGAATTCAGCGGTATATGGAACAATTCCCTGATGGTGG ATATTTTAAAGGGAAGAACTTTGTTTTTGATCATCGAATATCGGTTGGAAGTTCGGACACCAACATTTTAGGCGCCTGCCTCTTGTGTGGCTCGTCGTTT GACGACTATTCATCGCGTTGCCGATGCTTTTTCTGCAGAATGCTCGTCTTGGTGTGTCGTGGATGTCAGACAGAGGGGGGAGTCTATGTATGTGAGCTAT GCCAGAAACATGGAAAGAGCATTGACTCAAAGCTCAAACAATTGGCGATAGAAGATGAGCAACCTGATATTGATTCCTCTGATACTTGTGATGACATTGG GCCGTCAAGAAAGCTCAAAATCTTATGCTTGCATGGGTTTCGGCAGAATGCTTCTGGTTTTAGAGGAAGGACTGCCTCATTAGCCAAGAAACTTAAAAGA ATCGCAGAGCTGGTTTTTGTTGATGCTCCGCATGAGTTGCCTTATGTCTATTGTCCCGTCCCAGGACAAGAACATACTGCAGAACATTCATCCGAATTGC GACAAATACCTCCACCAGATAATTGCAGGAGGAAGTTTGCCTGGTTCACAGGACCAGATAATAAAAAGGGAAGCAGTGAAACTGATTGGAAAATGGCAGA TGCTCCATTTGATCCCCTACAATACCAACAACAAAATCAGGGATTTGATGTTTCAGTTGAACACTTACGGGATGTCTTCGCAAGGGAAGGACCATTTGAC GGGATTCTGGGATTTTCACAGGGAGCAGCAATGGCTGCGTCGGTTTGTTGTTTGGAACCGAAGTTGAGGGGGGAAATGAAGTTCAGGTTTGCAGTATTTT GCTCTGGGTTTGCAGTTGACCTTGGCAAGAATATTGAACCGGGATCAATTAAATGCCCTTCTCTTCATATATTTGGCAGCACGGTGGGAAAGGATAGGCA GATCGACAATGTAGCTAGCGGAGAACTCACCTCGTTATTCGAGGGTGGTTGCTCTGTTGTGATCGAACATGACTGCGGCCATATCATTCCTACGCGCCAT CCATATATAGATGATGTAAAATCCTTTCTTCATCGTTTTTTGTGA
AA sequence Show only first row Show all	>Lus10008045 pacid=23144292 polypeptide=Lus10008045 locus=Lus10008045.g ID=Lus10008045.BGIv1.0 annot-version=v1.0 MEESKEQKRLEEEGEEEEEEEEKEDPYGILLYYRYTSIPDLNSLLSFYHHNCNSLSLLGRVRLSSNGVNVTVGGKLSCLKKHIVALKSHHPCFQQGTDFK LASCDFPPFNDHVVAREVGFTSLSIRIVKELVTFSSSPLLKPPDIANAGTHLSASEFHSLLHSAAGNDSKEIVLLDARNLYETRIGKFDTPCVETLDPQI RQYSDLPSWIDDHSEQLRGRNVLMYCTGGIRCEMASAYIKSKGAGFENVFQLFGGIQRYMEQFPDGGYFKGKNFVFDHRISVGSSDTNILGACLLCGSSF DDYSSRCRCFFCRMLVLVCRGCQTEGGVYVCELCQKHGKSIDSKLKQLAIEDEQPDIDSSDTCDDIGPSRKLKILCLHGFRQNASGFRGRTASLAKKLKR IAELVFVDAPHELPYVYCPVPGQEHTAEHSSELRQIPPPDNCRRKFAWFTGPDNKKGSSETDWKMADAPFDPLQYQQQNQGFDVSVEHLRDVFAREGPFD GILGFSQGAAMAASVCCLEPKLRGEMKFRFAVFCSGFAVDLGKNIEPGSIKCPSLHIFGSTVGKDRQIDNVASGELTSLFEGGCSVVIEHDCGHIIPTRH PYIDDVKSFLHRFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09280			unknown protein		Lus10008045 [exp]	0	1
AT3G20190			Leucine-rich repeat protein ki...		Lus10033339 [exp]	2.0	0.8482
AT1G06790			RNA polymerase Rpb7 N-terminal...		Lus10035380 [exp]	3.3	0.8072
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Lus10029173 [exp]	9.2	0.8309
AT4G34880			Amidase family protein (.1)		Lus10027852 [exp]	12.7	0.8097
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Lus10011130 [exp]	13.6	0.7731
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Lus10032555 [exp]	15.9	0.8013
AT5G12290		DGS1	dgd1 suppressor 1 (.1)		Lus10038461 [exp]	16.6	0.8376
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	28.7	0.8326
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001440 [exp]	28.9	0.8185
AT4G32910			unknown protein		Lus10011625 [exp]	31.1	0.7991

Compare expression of checked genes

Lus10008045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.