Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39140 62 / 3e-11 RING/U-box superfamily protein (.1.2.3.4.5) AT1G75400 61 / 7e-11 RING/U-box superfamily protein (.1) AT2G21500 58 / 7e-10 RING/U-box superfamily protein (.1.2) AT1G19680 55 / 1e-08 RING/U-box superfamily protein (.1) AT5G18260 51 / 1e-07 RING/U-box superfamily protein (.1) AT1G14180 50 / 3e-07 RING/U-box superfamily protein (.1.2) AT5G57820 42 / 9e-05 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017978 [exp] 70 / 8e-14 AT4G39140 318 / 3e-105 RING/U-box superfamily protein (.1.2.3.4.5) Lus10041970 [exp] 70 / 9e-14 AT4G39140 316 / 3e-104 RING/U-box superfamily protein (.1.2.3.4.5) Lus10020256 [exp] 59 / 8e-10 AT5G18260 124 / 4e-32 RING/U-box superfamily protein (.1) Lus10002639 [exp] 58 / 2e-09 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1) Lus10036764 [exp] 55 / 8e-09 AT1G14180 134 / 2e-37 RING/U-box superfamily protein (.1.2) Lus10037162 [exp] 48 / 3e-06 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10007703 [exp] 40 / 0.0008 AT5G57820 47 / 8e-07 zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G063100 [exp] 106 / 6e-28 AT4G39140 65 / 7e-12 RING/U-box superfamily protein (.1.2.3.4.5) Potri.018G119600 [exp] 105 / 1e-27 AT1G75400 63 / 2e-11 RING/U-box superfamily protein (.1) Potri.009G120000 [exp] 72 / 2e-14 AT4G39140 340 / 2e-113 RING/U-box superfamily protein (.1.2.3.4.5) Potri.004G158400 [exp] 71 / 3e-14 AT4G39140 352 / 2e-118 RING/U-box superfamily protein (.1.2.3.4.5) Potri.005G231500 [exp] 67 / 5e-13 AT1G75400 337 / 5e-112 RING/U-box superfamily protein (.1) Potri.002G031600 [exp] 61 / 9e-11 AT1G75400 329 / 7e-109 RING/U-box superfamily protein (.1) Potri.013G060900 [exp] 57 / 2e-09 AT5G18260 123 / 9e-32 RING/U-box superfamily protein (.1) Potri.019G032300 [exp] 56 / 4e-09 AT5G18260 122 / 2e-31 RING/U-box superfamily protein (.1) Potri.006G180600 [exp] 45 / 2e-05 AT5G18260 52 / 4e-07 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10008046 pacid=23144298 polypeptide=Lus10008046 locus=Lus10008046.g ID=Lus10008046.BGIv1.0 annot-version=v1.0 ATGGGTAAGAGGAAGCGAACTGCCACCACTCCCCACCCCAACAACCCGTCAACAGAACCTCATCCCTCTTCCCCTTCTCCCTCTGGTGATATGCCGTTCT TTTCTGCAACGGAATTACTCTCACACGAGAAAAGCTCCGGTTTACTCGATTCAAATGAAGTGAAGCAAACTCAAGATAATCCCTCCAGACTGCTGAATCT GCACTCTTCTCTTTCTCACCAACACTGCAACCAGCTTGGTCGGTTATCGAAAAGGTCTCGTCATCATTATGGCCATCACTACTCTCGTAGGAATGCAGGA AATCACGTGGGATCATCGAGTTCTCCCGCAAAGAATCATCCACCTCTCCGAGATGACAGAGTCCACTTCAAGTTTGGTAGTCAACAAGCAGGCCGAGAGT ACATGCATCAAGGAGGAGGTTTGAGCAGACCTGAGAGGATGATCCATTCCGGATTCGGGAGGATGAAGAACGAATGTGGGATATGTCAGAAGGTGTTGCG ACGAAAACCTTACATCCACGGAGATGCATTATCTGGTGGTGGTGAATACGCAGTAGTGGCCGTTCTAGTTTGCGGCCATATGTATCATGCAGACTGTTTG GAAGAGAGGACAAGAATTGAACATAAGTCTGACCCAGAATGCCCTTTATGTGTAGTAGGCTCACCATCTCAGCCATGA
AA sequence Show only first row Show all	>Lus10008046 pacid=23144298 polypeptide=Lus10008046 locus=Lus10008046.g ID=Lus10008046.BGIv1.0 annot-version=v1.0 MGKRKRTATTPHPNNPSTEPHPSSPSPSGDMPFFSATELLSHEKSSGLLDSNEVKQTQDNPSRLLNLHSSLSHQHCNQLGRLSKRSRHHYGHHYSRRNAG NHVGSSSSPAKNHPPLRDDRVHFKFGSQQAGREYMHQGGGLSRPERMIHSGFGRMKNECGICQKVLRRKPYIHGDALSGGGEYAVVAVLVCGHMYHADCL EERTRIEHKSDPECPLCVVGSPSQP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39140			RING/U-box superfamily protein...		Lus10008046 [exp]	0	1
AT4G32480			Protein of unknown function (D...		Lus10018603 [exp]	8.9	0.8179
AT1G53903			Protein of unknown function (D...		Lus10003939 [exp]	10.7	0.8801
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10016273 [exp]	13.8	0.8757
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	20.3	0.8730
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008935 [exp]	23.6	0.8699
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	26.4	0.8680
AT5G60330			unknown protein		Lus10018274 [exp]	29.3	0.8667
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10042106 [exp]	29.7	0.8507
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	32.2	0.8653
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012018 [exp]	32.4	0.8150

Compare expression of checked genes

Lus10008046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.