Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20410 669 / 0 ATMGD2, MGD2 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1) AT2G11810 667 / 0 ATMGD3, MGDC MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, monogalactosyldiacylglycerol synthase type C (.1.2) AT4G31780 503 / 1e-175 UGT81A1, EMB2797, MGDA, MGD1 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) AT4G16130 42 / 0.0008 ATISA1, ARA1 arabinose kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016359 [exp] 855 / 0 AT5G20410 686 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1) Lus10026895 [exp] 497 / 6e-173 AT4G31780 758 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) Lus10003418 [exp] 496 / 1e-172 AT4G31780 764 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G063300 [exp] 745 / 0 AT5G20410 691 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1) Potri.018G123000 [exp] 731 / 0 AT5G20410 668 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1) Potri.018G016600 [exp] 501 / 2e-174 AT4G31780 723 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) Potri.006G266500 [exp] 494 / 5e-172 AT4G31780 743 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF04101 [flax] [poplar] Glyco_tran_28_C Glycosyltransferase family 28 C-terminal domain CL0113 [flax] [poplar] GT-B PF06925 [flax] [poplar] MGDG_synth Monogalactosyldiacylglycerol (MGDG) synthase
Representative CDS sequence Show only first row Show all	>Lus10008048 pacid=23144277 polypeptide=Lus10008048 locus=Lus10008048.g ID=Lus10008048.BGIv1.0 annot-version=v1.0 ATGGTGATGAAAGTTGCTACCCCACGCAAGGCTTCGTCCATAACGGAGGTCTTGCAGAGAGTTTACGGGAATTTAGGTTCCGGCAGCAGTGCTAACTCCG CCCTCGGAAGTTACGGCCACCACCGTCTCACCAACAAGCATCGCCACGAGCCTAACTACTTCGTCCACGACACCGAGGATGATTTCGAGGAGGAGGACGG CACCATGGAGCTTGCTCAAATTGGGGCCGAGAGGACCAAGAATGTCCTGATTCTCATGAGCGATACCGGTGGCGGCCACCGCGCTTCCGCCGAGGCCATC CGCGACGCCTTCAAGCTCGAGTACGGCGACGAGTACCGGATAATTGTGAAGGATGTTTGGAAAGAGTACACAGGATGGCCATTGAACGACATGGAGAGGC AGTACAAATTCATGGTGAAGCATGTGCAGCTATGGAAGGTGGCATTTCACAGCACATCTCCTAAGTGGATTCACAGCTGCTACCTTGCTGCCATAGCCGC CTACTATGCCAAGGAGGTGGAGGCTGGTTTAATGGAGTACAAGCCGGACATTATCATCAGTGTTCATCCATTAATGCAGCATATTCCATTGTGGGTTCTG AAATGGCAAGGCCTGCAGAAGAAAGTGGTTTTCGTTACAGTTATTACCGACCTCAATACTTGCCATCCCACGTGGTTTCATCCTGGAGTAGATAGATGTT ACTGTCCTTCGAAGGAAGTGGCAAAGCGGGCAGGTATAGATGGTCTGGAAGAGTCTCAAATACAAGTGTTCGGCTTGCCAATCCGGCCTTCTTTTGCCCG TGCAGTTTTCACCAAGGGGGAACTAAGAGAAGATCTTGACATGGAACCAGATCTGCCAGCAGTTTTGCTGATGGGCGGTGGTGAAGGAATGGGACCTGTA AAGAAAACTGCACTGGCTTTGGGGGAATCTCTGTTTGATAAGGAATTTGGCAGACCGTTAGGACAGTTGATAATCATATGTGGACGTAACGAGGTTCTCA GATCTACATTGGAGTCTGAGGAATGGAACATCCCAGTTAAGGTTAGAGGATTCGAGACAAAGATGGAAAGATGGATGGGAGCTTGTGACTGCATAATTAC AAAGGCTGGACCAGGGACGATTGCGGAAGCGTTGATTAGAGGGCTTCCTATTATTCTCAACGACTACATTCCAGGACAAGAAAAGGGTAATGTGCCGTAT GTAGTAGACAACGGTGCGGGTGTGTTCACCCGAAGTCCAAAAGAAACGGCGAAAATAGTGGCGGAGTGGTTCACAAGCAACAAAGATGATTTGAAGAGAA GGTCGGAGAAGGCAATGGAGCTATCGCAACCAGAGGCAGTGTTTGACATCGTGAAGGACATTCACCAGCTTGCGCAAGATCGAGGGCCTCTCGCAAGAAT ACCTTACGTGTTAACATCGTCATTCACAAGCCTAATATAG
AA sequence Show only first row Show all	>Lus10008048 pacid=23144277 polypeptide=Lus10008048 locus=Lus10008048.g ID=Lus10008048.BGIv1.0 annot-version=v1.0 MVMKVATPRKASSITEVLQRVYGNLGSGSSANSALGSYGHHRLTNKHRHEPNYFVHDTEDDFEEEDGTMELAQIGAERTKNVLILMSDTGGGHRASAEAI RDAFKLEYGDEYRIIVKDVWKEYTGWPLNDMERQYKFMVKHVQLWKVAFHSTSPKWIHSCYLAAIAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVL KWQGLQKKVVFVTVITDLNTCHPTWFHPGVDRCYCPSKEVAKRAGIDGLEESQIQVFGLPIRPSFARAVFTKGELREDLDMEPDLPAVLLMGGGEGMGPV KKTALALGESLFDKEFGRPLGQLIIICGRNEVLRSTLESEEWNIPVKVRGFETKMERWMGACDCIITKAGPGTIAEALIRGLPIILNDYIPGQEKGNVPY VVDNGAGVFTRSPKETAKIVAEWFTSNKDDLKRRSEKAMELSQPEAVFDIVKDIHQLAQDRGPLARIPYVLTSSFTSLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20410		ATMGD2, MGD2	ARABIDOPSIS THALIANA MONOGALAC...		Lus10008048 [exp]	0	1
AT2G22730			Major facilitator superfamily ...		Lus10019244 [exp]	1.7	0.8373
AT1G23110			unknown protein		Lus10007928 [exp]	4.9	0.7934
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001628 [exp]	7.7	0.7650
AT5G01220		SQD2	sulfoquinovosyldiacylglycerol ...		Lus10004832 [exp]	18.7	0.7293
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10022924 [exp]	23.1	0.7728
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10028811 [exp]	26.2	0.7762
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Lus10026429 [exp]	29.1	0.7542
AT5G53140			Protein phosphatase 2C family ...		Lus10014926 [exp]	32.2	0.6618
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10033291 [exp]	41.6	0.7218
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10041352 [exp]	43.5	0.7444

Compare expression of checked genes

Lus10008048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.