Plant FIBer expression Database

Lus10008051 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10008051 pacid=23144290 polypeptide=Lus10008051 locus=Lus10008051.g ID=Lus10008051.BGIv1.0 annot-version=v1.0
ATGATCTCAACAGAATCAACAAACACTGCCCACGTTCAACAGACTACAAAAAGAACTAAAATGGGTCTTGGCAAAAGAAAACTAAATATACATAAGACCA
AGTTTGTTGCTCGTCAGAATCCTATTCCTGTGAAATCTCCTACAGGGAGCAAACACTCTGGAACAACCAAGAATCAGAAGGAGAAAGTGGTTTCTATCTC
GCAAGAGCCGCGTGGCCCATCTAATCAGGCCCAAGCTGGAAAATCCAGCAGTGGTTTGACTATTAAGGAGAAGAAGAAGGTGGCTACTGGTGGATCTATT
GCCACTCGCCCACTTGCAAAGAGCCCAGTAGGTGGGCTGGTTCTTTCGGCCCAATCCAGCTCGAAACTCTTTTACTCAACAGTCCAAATTGTCTCCAACC
CGGCATACGTGGTCGGCCTACCCACTGTCCCGACTCGTCTGGCGAACCAAACCGCTTCGTCTCCTCTGTCGCCTGTCACATGCCCGGCAGCACCCACGGT
GGCTGCTCCGTCAATCTCCTCTACCATTGCTCAGAACTCTGTTCCGCCGTCCATGCCGGTCAATCCAAGTATCCAATCGACATCTGTTCCCATTCATATG
GAGGAATATCCCCCAAAAGCTTCACCTCCGCCTTTAACCGCCGTGGGTGCTGATTCTCTGAAGGAATCATCGCAACCCTCTGCAACTACTAGCTCAGGGC
CGATTATTAAGCCTACTCTTCTTCATAAGAAGTCAGTGTTGAGCCCCACTCTTCATGGAAATGGGAGCAGTCGGGAGAAACTCACGATTCAGAACCGACG
CAAACCGCGGCGGGAGAAAGCTGTCGACCCTCTTCCTTTTAATACCTTCCAAAAACCACATCTTGAGTCCACTGATGTCTCCCTTCCTGCTCGGAATTTA
GTTGATGTGGGTGCTTTGATTAATGTGGGTATTGCCGAAGCTGCTTCAAGGGATGAATCAAGTGATAGCAGTGATGAGGAGGTGGATGCTTCTTGTGCTC
GGCTCCATCAAATGCAACAGCTGGGCAGGAAGGCTTTAGGACATGACGTGGCTCCAATTCATTCCTGA
AA sequence
>Lus10008051 pacid=23144290 polypeptide=Lus10008051 locus=Lus10008051.g ID=Lus10008051.BGIv1.0 annot-version=v1.0
MISTESTNTAHVQQTTKRTKMGLGKRKLNIHKTKFVARQNPIPVKSPTGSKHSGTTKNQKEKVVSISQEPRGPSNQAQAGKSSSGLTIKEKKKVATGGSI
ATRPLAKSPVGGLVLSAQSSSKLFYSTVQIVSNPAYVVGLPTVPTRLANQTASSPLSPVTCPAAPTVAAPSISSTIAQNSVPPSMPVNPSIQSTSVPIHM
EEYPPKASPPPLTAVGADSLKESSQPSATTSSGPIIKPTLLHKKSVLSPTLHGNGSSREKLTIQNRRKPRREKAVDPLPFNTFQKPHLESTDVSLPARNL
VDVGALINVGIAEAASRDESSDSSDEEVDASCARLHQMQQLGRKALGHDVAPIHS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10008051
[exp]
0 1
AT4G13400 2-oxoglutarate (2OG) and Fe(II... Lus10033085
[exp]
3.7 0.9569
AT4G29820 CFIM-25, ATCFIM... ARABIDOPSIS THALIANA HOMOLOG O... Lus10027624
[exp]
4.6 0.9379
AT1G24020 MLP423 MLP-like protein 423 (.1.2) Lus10039830
[exp]
5.3 0.9438
Lus10018670
[exp]
8.9 0.9201
Lus10035913
[exp]
10.0 0.9144
AT2G39855 unknown protein Lus10004678
[exp]
10.4 0.9563
AT3G53980 Bifunctional inhibitor/lipid-t... Lus10040249
[exp]
12.4 0.9325
AT2G46680 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX ... Lus10005997
[exp]
14.0 0.9465
AT1G24020 MLP423 MLP-like protein 423 (.1.2) Lus10029185
[exp]
15.9 0.9091
AT1G70460 AtPERK13, RHS10 proline-rich extensin-like rec... Lus10030879
[exp]
16.0 0.9474

Lus10008051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.