Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038116 [exp] 701 / 0 ND / Lus10001956 [exp] 151 / 2e-44 ND / Lus10001918 [exp] 107 / 3e-27 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G063600 [exp] 438 / 3e-153 ND / Potri.018G123400 [exp] 437 / 1e-152 ND / Potri.006G256900 [exp] 279 / 8e-91 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008052 pacid=23144297 polypeptide=Lus10008052 locus=Lus10008052.g ID=Lus10008052.BGIv1.0 annot-version=v1.0 ATGGCAGACCATCCCTCATTCAAGCAAGACGTATCTCGTCTTCTCCAAGTGCTCGAAGCTCTGAAACAAGCATCTAACTCCCTCCAATCAAACCCCACTC CTTCCTCCCCCGCCATCAAACCTCTCTTGGAGCTCCACACTGCCTCTCACGCTATCCTCTCCAACGACCCTAACCTCTCCTCCTTATCCCACTCCCTCGC CCAGCTTAACTCCTTCGTCGACACCTTCAACCGATCTCACGCTCACACCATCCCTAGCTTCTTCTCTCGCGGTGCCTCCGCCCGCTCCATCTCCAAAGTC GCCGTCTCTATCGAGTCACAAATCCAGGCTTGGATCGACAGAGAAATCATCCACACCTTAGCTCAATCCCTGGAAAAACTCAACCCCAACGAACAACAAC AAGAAGAATTGATAGCTATATTTACTCGTTTCGAGAACAGAGTCAATCAAGGATTCAACCGCGACCTGCAGGATTTGGTTCTCAAGTCTAGAATCTTCGG GTCGTTGCATCGAATCCTATGCGACCCGGATCACTCTAACCTGATCCGGGAGCGCTGCGCTTCCTCCATCGCTGCGTTAATCAGATTCAACAAGGACGTC TTCGCCGGGCTTCTGACGCCGCAGGTGATCCAAGCGCTAGTCTCCATCGGCTCTTCCAAATCAATTCGTGTCCTGATCTCGTTGATCAAATCGATCAAGT CGCCGCTGGTCGACGAGATCGAATTCAACGGCCAAATCCCTAAAATTATCGGTTTTCTGGACGGGAAAGAGCAGGATGAGGAGACAAAAGTGTTGACGGT GGACTGCTTGATGGAGATGGGGTACTACGGGAGGAAAGAAGCAATCGACGCGATGGTGAAGCATGGGTTGATAGAGAAGCTTGTGGAGCTGCAGCGGTCG GAATTGGGCGGAGATTTGATCGGTATGGAGAAATTCGACGACGACGAAGGCGGTGGCGGCGGAGTAAGGAAGAAGAAATGTAGGAAGGAGTTGGGTTTTA TTGAAAGGCATCCATTTGCGAGCTGCGTAGCGAGATTTGCGGTGCAGGTGGAGGTCGGGGAAGGGCTGAGACAGAGGGAGAAGAGGGCGTTGAAGCCGGA GATACTCCGATGCGTAAGGGAAGGTTGCGTCTCCGATGCGGAAGCTGCCACCATTGTAGCCGAGGTACTGTGGGGATCTACGCCGTGA
AA sequence Show only first row Show all	>Lus10008052 pacid=23144297 polypeptide=Lus10008052 locus=Lus10008052.g ID=Lus10008052.BGIv1.0 annot-version=v1.0 MADHPSFKQDVSRLLQVLEALKQASNSLQSNPTPSSPAIKPLLELHTASHAILSNDPNLSSLSHSLAQLNSFVDTFNRSHAHTIPSFFSRGASARSISKV AVSIESQIQAWIDREIIHTLAQSLEKLNPNEQQQEELIAIFTRFENRVNQGFNRDLQDLVLKSRIFGSLHRILCDPDHSNLIRERCASSIAALIRFNKDV FAGLLTPQVIQALVSIGSSKSIRVLISLIKSIKSPLVDEIEFNGQIPKIIGFLDGKEQDEETKVLTVDCLMEMGYYGRKEAIDAMVKHGLIEKLVELQRS ELGGDLIGMEKFDDDEGGGGGVRKKKCRKELGFIERHPFASCVARFAVQVEVGEGLRQREKRALKPEILRCVREGCVSDAEAATIVAEVLWGSTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008052 [exp]	0	1
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10010293 [exp]	1.0	0.9296
AT4G25030			unknown protein		Lus10041414 [exp]	1.7	0.9170
AT2G19460			Protein of unknown function (D...		Lus10011939 [exp]	2.8	0.8987
AT1G12440			A20/AN1-like zinc finger famil...		Lus10028903 [exp]	4.0	0.9267
AT2G32190			unknown protein		Lus10010460 [exp]	8.1	0.9037
AT1G30090			Galactose oxidase/kelch repeat...		Lus10028121 [exp]	9.5	0.8975
AT1G52080		AR791	actin binding protein family (...		Lus10025846 [exp]	9.8	0.8937
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10005992 [exp]	10.7	0.8823
AT3G11180			2-oxoglutarate (2OG) and Fe(II...		Lus10004387 [exp]	12.7	0.8892
AT5G01750			Protein of unknown function (D...		Lus10002477 [exp]	12.8	0.8724

Compare expression of checked genes

Lus10008052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.