Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G34850 774 / 0 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT2G27190 540 / 0 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT2G16430 533 / 0 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT4G36350 510 / 5e-179 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT1G56360 509 / 6e-179 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT2G18130 438 / 4e-151 PAP11, ATPAP11 purple acid phosphatase 11 (.1) AT1G52940 431 / 6e-149 PAP5, ATPAP5 purple acid phosphatase 5 (.1) AT3G46120 348 / 2e-116 ATPAP19, PAP19 purple acid phosphatase 19 (.1) AT3G20500 317 / 8e-104 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52810 304 / 1e-98 ATPAP21, PAP21 purple acid phosphatase 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027710 [exp] 853 / 0 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1) Lus10039978 [exp] 850 / 0 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1) Lus10006126 [exp] 521 / 0 AT2G27190 681 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10028799 [exp] 519 / 0 AT2G16430 746 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017484 [exp] 515 / 0 AT2G16430 748 / 0.0 purple acid phosphatase 10 (.1.2) Lus10041959 [exp] 514 / 2e-180 AT2G16430 731 / 0.0 purple acid phosphatase 10 (.1.2) Lus10028798 [exp] 495 / 3e-173 AT2G16430 673 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017485 [exp] 493 / 3e-172 AT2G16430 671 / 0.0 purple acid phosphatase 10 (.1.2) Lus10024299 [exp] 469 / 3e-163 AT2G27190 612 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G063700 [exp] 810 / 0 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.018G123700 [exp] 788 / 0 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.018G024800 [exp] 763 / 0 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.009G121200 [exp] 547 / 0 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2) Potri.004G160100 [exp] 544 / 0 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.005G233400 [exp] 543 / 0 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.002G029300 [exp] 532 / 0 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.011G138200 [exp] 321 / 1e-105 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 309 / 8e-101 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 290 / 2e-93 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10008054 pacid=23144275 polypeptide=Lus10008054 locus=Lus10008054.g ID=Lus10008054.BGIv1.0 annot-version=v1.0 ATGAAGCACACATGGCATCCTCTTCTTATTATAACCACGTTGTTTGTGTTGCTGAGTCTTGTGAACAATGGGGAAGCCAAGATCACTAGTGATTTTGTTC GGGCGGAGTGGCCATCAACTGACATCCCTCTTGATAATGAAGCCTTTGCAGTTCCAAATGGTCACAATGCACCTCAACAGGTGCACATCATCCAAGGTGA CTACGAGGGGAAGGCTGTGATTGTTTCATGGGTAACACCTCATGAGGCTGGATCAAGCAGAGTAGAGTATGGTAAATCGGAGAAGACATATGACTCGACT GCTGAAGGGACAGTAGCAAACTATACCTTCTGCAAATACAAGTCTGGATACATTCACCAGTGCCTACTTGATCAACTTGAGTATGCTACAAAGTACTATT ACAAGATCGGTGATGGCGAATCTTCTAGAGAGTTTTGGTTTCAAACGCCACCAGATATTCATCCAGATGCTTCTCACAAGTTTGGAATAATAGGCGATCT AGGCCAGACATATAACTCTTTGTCTACTCTTCAGCATTACATGCAGAGTGATGCAGATGCAGTGTTGTTTGTTGGAGACCTTTCGTATTCTGATAGATAC CAGTATAACGATGTTGGCATTCGATGGGATACATGGGGCCGTTTCGTTGAGCAAAGTGCAGCATACCAACCATGGATGTGGTCAGCTGGAAATCATGAAA TAGAATTCATGCCTTACATGAATGAAGTTGTTCCTTTCAAATCCTTTCTTCATCGGTACCCTACTCCGTACTTGGCTTCCAAAAGTACCAACCCTCTTTG GTATTCCATCAAACGCGCATCTGCTCACATAATTGTGCTTTCCAGCTATTCTCCTTTCGTGAAATACACTCCTCAATGGACATGGCTCCAGGAAGAGTTG AAGAAGGTTGACAGAGAGAAGACACCTTGGCTCATCGTTCTCATGCATGTCCCTATGTACAATAGCAACGAAGCACATTTCATGGAAGGTGAAAGCATGC GAGCAGCTTTTGAGGAGTGGTTTGTTCGCTACAGAGTTGATGTCATCTTTGCCGGTCATGTTCATGCATATGAAAGATCGTATCGCATCTCGAACATACA ATATAACGTGTCAAGTGGCGATCGATATCCTGTTTCAGACAAATCTGCTCCTGTCTACATTACCGTTGGGGATGGAGGGAATCAAGAAGGTCTTGCAAGC AGGTTTTTAGACCCACAGCCAGATTATTCTGCATTCAGAGAAGCCAGTTATGGACATTCAACGTTAGAGATAAAGAATAGAACACATGCATTCTACCACT GGAATCGCAATGATGATGGCAAGAGGGTGGCCACTGATGCATTCATATTGCACAACCAGCACTGGGGAAGCAATCTGAGACGAAGAAAACTAAACAAGCA TCATTTACAAAGTATCATCCAGCCGGTTAATGCCGATTACTTCCGAGATTTGGAGTGA
AA sequence Show only first row Show all	>Lus10008054 pacid=23144275 polypeptide=Lus10008054 locus=Lus10008054.g ID=Lus10008054.BGIv1.0 annot-version=v1.0 MKHTWHPLLIITTLFVLLSLVNNGEAKITSDFVRAEWPSTDIPLDNEAFAVPNGHNAPQQVHIIQGDYEGKAVIVSWVTPHEAGSSRVEYGKSEKTYDST AEGTVANYTFCKYKSGYIHQCLLDQLEYATKYYYKIGDGESSREFWFQTPPDIHPDASHKFGIIGDLGQTYNSLSTLQHYMQSDADAVLFVGDLSYSDRY QYNDVGIRWDTWGRFVEQSAAYQPWMWSAGNHEIEFMPYMNEVVPFKSFLHRYPTPYLASKSTNPLWYSIKRASAHIIVLSSYSPFVKYTPQWTWLQEEL KKVDREKTPWLIVLMHVPMYNSNEAHFMEGESMRAAFEEWFVRYRVDVIFAGHVHAYERSYRISNIQYNVSSGDRYPVSDKSAPVYITVGDGGNQEGLAS RFLDPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKRVATDAFILHNQHWGSNLRRRKLNKHHLQSIIQPVNADYFRDLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10008054 [exp]	0	1
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10034413 [exp]	3.5	0.7483
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10038760 [exp]	5.2	0.7142
					Lus10002467 [exp]	5.7	0.6764
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10018009 [exp]	6.6	0.7701
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021892 [exp]	9.8	0.6759
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10027990 [exp]	11.4	0.6757
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10033575 [exp]	12.4	0.6838
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10040592 [exp]	13.0	0.7001
AT1G13680			PLC-like phosphodiesterases su...		Lus10035130 [exp]	13.6	0.7029
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037087 [exp]	16.4	0.7013

Compare expression of checked genes

Lus10008054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.