Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05500 714 / 0 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 686 / 0 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 292 / 6e-93 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT5G04220 230 / 6e-69 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G20990 192 / 1e-54 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G20080 190 / 1e-53 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61030 160 / 3e-43 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 157 / 3e-41 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT1G53590 75 / 4e-14 NTMCTYPE6.1 ,NTMC2T6.1 ,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G14590 75 / 5e-14 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038117 [exp] 957 / 0 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10006193 [exp] 663 / 0 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041034 [exp] 613 / 0 AT5G11100 710 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10039979 [exp] 393 / 2e-133 AT5G11100 379 / 2e-127 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10027709 [exp] 275 / 1e-88 AT1G05500 264 / 1e-84 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041396 [exp] 271 / 7e-85 AT3G61050 676 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10036532 [exp] 268 / 3e-83 AT3G61050 672 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040414 [exp] 210 / 4e-61 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10037993 [exp] 207 / 6e-60 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G124000 [exp] 782 / 0 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 768 / 0 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 673 / 0 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G072800 [exp] 272 / 2e-85 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G150700 [exp] 272 / 3e-85 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G038300 [exp] 218 / 5e-64 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 211 / 2e-61 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.009G134200 [exp] 204 / 3e-59 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.002G019800 [exp] 199 / 3e-57 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.005G241700 [exp] 197 / 1e-56 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10008055 pacid=23144270 polypeptide=Lus10008055 locus=Lus10008055.g ID=Lus10008055.BGIv1.0 annot-version=v1.0 ATGTCCTTCTTTGTTGGATTAGTCGTTGGGGTGTTCGTGGGTCTTGCTCTAATTGTCGTCTTTGTACGATCCGAGAATGCGCGATCCAAGCATCGTACTG AGCTCGCAACAACGATAGCTTCGTTTGCGAGGATGACAGTTGATGACTCCAGGAAGCTCTTATCTCCTGAGTACTATCCTTCCTGGGTCGTTTTCTCCCA GCACCAGAAGTTGAATTGGCTTAATTCTCATCTGATGAAGATCTGGCCTTATGTTAATGAGGCAGCGTCTGAGCTGATAAAGAGCTCAGTAGAGCCTACT CTTGAGCAATACAGACCCATAATTCTCTCATCTCTCAAGTTCTCCAAGTTCACTCTTGGTACCGTTGCCCCTCAGTTTACAGGAGTTTCCATTCTGGAGT CTGATAGCAATGGTGTAACCATGGAGTTGGAAATGAATTGGGACGGAAATCCTAACATAGTACTCGCTGTGAAAACCAGGCTCGGTGTCTCGCTGCCTGT GCAGGTGAAAGATATAGGTTTTACTGGGGTCTTCAGGTTGATTTTTAAGCCGCTGGTTGAAGAACTCCCTTGCTTTGGAGCTATTTGTTATTCACTGAGA CAAAAGAAAAAATTTGACTTCAAACTTAAAGTAATTGGAGGTGACATTTCATCGATACCTGGGCTTTCTGGTGCTCTGGAGGAAACTATACACAATGCTA TCGAAGACTCTATTACCTGGCCTGTCCGTAAAATTGTCCCTATTTTGCCTGGAGATTACAGTGACTTGGAGTTGAAGCCATGTGGTATGCTGGAAGTGAA ACTTGTTCAAGCAAAGAACTTGACTAACAAGGACTTCATCGGGAAATCAGATCCCTATGCTGAATTGTACATTAGGCCTCTACGTGACAGAACAAAGATT AGTAAAATCATTAGCAATGATCTCAATCCAATTTGGAATGAACACTATGAATTTGTTGTGGAGGATGCATCTACTCAGCACTTGTATGTTAAGATTTTTG ACGACGAGGGGCTGCAAGCTTCTGAGCTACTTGGATGTGCTCAAGTTCCGTTGAGCCAGCTTGAACCTGGTAAAGTGAAGGATGTGTGGTTGAAGCTAGT TAAGGATTTGGAGGTCCAAAGAGATAACAAAAACCGCGGGGAGGTGCACTTGGAGCTTCTCTACTGCCCTACCGGAATGGAGAATAGCTTCACAAATCCC TTCGCTAAGAAAGTTGAGATGACAAGCTTAGAAAGGGTGCTCAAAAGTTCAGGAAACGGGACAGATGCTGCTGAAACTGAAAGGGAAGCCACACAAAAGA AAAGGGAGGTAATTGTTAGAGGAGTTTTATCTGTCACTGTGCTCTCTGCCGAAGACTTGCCTGTGGTTGATTTCATGGGCAAGGCTGACGCTTTCACATT TGGCACAGAGTATATTGGGAGATGCATCTTAACATTGACTAGGGTCATCATGGAAGGAGAATACAGAGAATGCTTTCAGCTAGATCGTGCTAAATCTGGA AAACTGACTTTGAATCTCAAGTGGATGCCACAACCGATCTACCGCGATTCCGGAATGTAG
AA sequence Show only first row Show all	>Lus10008055 pacid=23144270 polypeptide=Lus10008055 locus=Lus10008055.g ID=Lus10008055.BGIv1.0 annot-version=v1.0 MSFFVGLVVGVFVGLALIVVFVRSENARSKHRTELATTIASFARMTVDDSRKLLSPEYYPSWVVFSQHQKLNWLNSHLMKIWPYVNEAASELIKSSVEPT LEQYRPIILSSLKFSKFTLGTVAPQFTGVSILESDSNGVTMELEMNWDGNPNIVLAVKTRLGVSLPVQVKDIGFTGVFRLIFKPLVEELPCFGAICYSLR QKKKFDFKLKVIGGDISSIPGLSGALEETIHNAIEDSITWPVRKIVPILPGDYSDLELKPCGMLEVKLVQAKNLTNKDFIGKSDPYAELYIRPLRDRTKI SKIISNDLNPIWNEHYEFVVEDASTQHLYVKIFDDEGLQASELLGCAQVPLSQLEPGKVKDVWLKLVKDLEVQRDNKNRGEVHLELLYCPTGMENSFTNP FAKKVEMTSLERVLKSSGNGTDAAETEREATQKKREVIVRGVLSVTVLSAEDLPVVDFMGKADAFTFGTEYIGRCILTLTRVIMEGEYRECFQLDRAKSG KLTLNLKWMPQPIYRDSGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10008055 [exp]	0	1
AT5G27490			Integral membrane Yip1 family ...		Lus10004473 [exp]	3.2	0.8088
AT2G16595			Translocon-associated protein ...		Lus10026282 [exp]	4.1	0.8275
AT1G54220			Dihydrolipoamide acetyltransfe...		Lus10006877 [exp]	6.7	0.7876
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Lus10033080 [exp]	9.6	0.7961
AT1G05675			UDP-Glycosyltransferase superf...		Lus10003809 [exp]	10.4	0.7219
AT4G24530			O-fucosyltransferase family pr...		Lus10015890 [exp]	13.9	0.7769
AT4G32120			Galactosyltransferase family p...		Lus10001954 [exp]	18.5	0.7994
AT5G16730			Plant protein of unknown funct...		Lus10020373 [exp]	18.7	0.7648
AT1G61900			unknown protein		Lus10006773 [exp]	19.2	0.7711
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10014288 [exp]	19.7	0.7452

Compare expression of checked genes

Lus10008055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.