Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20280 1345 / 0 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) AT5G11110 1206 / 0 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT1G04920 1008 / 0 ATSPS3F sucrose phosphate synthase 3F (.1) AT4G10120 929 / 0 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT5G49190 143 / 7e-35 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT1G73370 140 / 7e-34 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT4G02280 135 / 3e-32 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G20830 129 / 3e-30 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT3G43190 124 / 1e-28 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT5G37180 118 / 5e-27 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038119 [exp] 1776 / 0 AT5G20280 1647 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Lus10016657 [exp] 1009 / 0 AT1G04920 1670 / 0.0 sucrose phosphate synthase 3F (.1) Lus10041041 [exp] 857 / 0 AT4G10120 1412 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Lus10022570 [exp] 521 / 1e-175 AT1G04920 717 / 0.0 sucrose phosphate synthase 3F (.1) Lus10006186 [exp] 241 / 1e-72 AT4G10120 303 / 8e-96 Sucrose-phosphate synthase family protein (.1.2) Lus10006184 [exp] 160 / 2e-45 AT4G10120 208 / 4e-63 Sucrose-phosphate synthase family protein (.1.2) Lus10006185 [exp] 152 / 1e-41 AT4G10120 189 / 2e-55 Sucrose-phosphate synthase family protein (.1.2) Lus10001468 [exp] 139 / 3e-33 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10007372 [exp] 135 / 3e-32 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G064300 [exp] 1512 / 0 AT5G20280 1625 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G124677 [exp] 1467 / 0 AT5G20280 1601 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.T124307 [exp] 1466 / 0 AT5G20280 1389 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G025100 [exp] 1326 / 0 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.017G057800 [exp] 1017 / 0 AT1G04920 1610 / 0.0 sucrose phosphate synthase 3F (.1) Potri.001G317600 [exp] 1016 / 0 AT1G04920 1644 / 0.0 sucrose phosphate synthase 3F (.1) Potri.013G095500 [exp] 926 / 0 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Potri.012G037200 [exp] 137 / 9e-33 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.002G202300 [exp] 136 / 2e-32 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.017G139100 [exp] 133 / 1e-31 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0137 [flax] [poplar] HAD PF05116 [flax] [poplar] S6PP Sucrose-6F-phosphate phosphohydrolase
Representative CDS sequence Show only first row Show all	>Lus10008056 pacid=23144294 polypeptide=Lus10008056 locus=Lus10008056.g ID=Lus10008056.BGIv1.0 annot-version=v1.0 ATGGCGGGCAACGACTGGATAAACAGTTACTTGGAAGCCATTCTCGATGTGGGTCCTGGACTGGACGACGCCAAATCATCGCTCTTGCTCAGGGAGCGAG GCCATTTCAGTCCCACTCGCTATTTCGTCGAAGAAGTCATCACTGGATTCGATGAGACCGATCTTCATCGCTCTTGGGCCAAGGCTCAAGCGACTAGAAG TCCACAGGAAAGGAACACCAGATTGGAGAACATGTGCTGGAGGATTTGGAATTTGGCTCGTCAGAAGAAACAGGTTTTCTTTTCTCCATACCTTTCTTCT TGGACTTTGATTTATCTTCATGGTTTAATACGAGGAGAAAGTATGGAGCTTGGCCGTGATTCCGATACTGGTGGTCAGGTTAAGTACGTTGTGGAACTTG CAAGAGCTTTGGGATCCATGCCAGGAGTGTATCGTGTTGATTTGTTAACAAGACAAGTATCAGCACCGGATGTAGATTGGAGCTATGGTGAACCCACCGA GATGTTGACTCTGACAAACATTGATGAAGATGAAGATGAGATGGGGGAGAGCAGTGGTGCTTATATTGTTCGTATACCATTTGGACCGAAGGACAAATAT ATCGAGAAAGAACTGCTGTGGCCTCACATTCCAGAATTTGTTGATGGTGCACTAAGCCATGTAATACAGATGTCCAAAGTCCTAGGTGAGCAGATTGGTG GTGGAAAACCAGTTTGGCCTGTTGCTATCCATGGCCACTATGCTGATGCTGGTGATTCTGCGGCTCTTCTTTCTGGTGCTCTAAATGTGCCAATGCTTTT TACTGGCCACTCACTTGGCCGTGACAAGTTAGAGCAACTCCTTACACAAGGTCGACTCTCAAGGGAAGAAATTAACTCCACATACAAAATCATGCGTAGG ATTGAGGCTGAGGAGCTTGCGCTTGATGCATCAGAGATTGTCATAACAAGTACCAGACAAGAGATAGAGCAACAATGGAGGTTGTATGATGGTTTTGATC CTATACTGGAACGTAAGCTGCGGGCAAGAATCAGGCGCAATGTCAGCTGTTATGGAAGGTTTATGCCCCGGATGGCTGTAATTCCACCCGGAATGGAATT CCACCACATTGTTCCACATGATGGTGATATGGAGGGTGAACTCGAGGGAAATGAAGACCATCCTACTACTCCTGAACCACAAATATGGCCTGAGATTATG CGCTTCTTTTCTAATCCTCGCAAGCCAATGATACTTGCATTGGCTAGGGCAGATCCCAAGAAGAACATAACAACTTTAGTCAAGGCATTTGGAGAATGCC GCCCCCTGAGAGAGCTCGCTAACCTGACACTAATCATGGGCAATAGAGATGGAATTGATGAAATGCCAAGTACAAATGCATCTGTCCTCCTTTCAGTTCT TAAGCTCATTGACAAATATGATTTATATGGTCAAGTGGCATATCCAAAACATCACAAACAGGCTGATGTTCCCGAAATATATCGCCTAGCTGCAAAGACA AAGGGTGTTTTCATCAATCCAGCTTTCATCGAACCATTTGGGCTCACCCTGATTGAGGCAGCAGCATATGGCTTGCCAATGGTTGCAACAAAGAATGGTG GTCCTGTAGACATACACCGGGTGCTTGACAATGGGCTTCTTGTTGACCCGCATGATCAACAATCTATTGCTAATGCGCTTCTGAAGCTTGTAGCTGACAA ACAGCTTTGGGCAAAATGCCGGCAAAATGGTTTGAAGAATATACATCTCTTTTCCTGGCCGGAGCATTGTAAAACCTACTTGTCCCGGATAGCTACTTGC AAACCAAGGCACCCTCAATGGGAGCAACCTGATGATGGAGGCGATACATCTGACATGGATTCGCCTGGTGATTCATTGAGGGACATAAATGATATTTCCT TGAACTTGAAGTTTTCAATGGACGGAGATAAGAGTGGAGAGAATTATCTCGAATCTGAAGGGAACACTGGTGATAATAAGAGCAAACTAGAGAATGCAGT GTTGGCTTGGTCAAGGGGTGTTCCGAAGGAATCACGCAAGACTGGAAACACAGAGAAAGGAGAACAATCCCAAAGTTCTGTTTTCCCTGCACTGAGAAGG AGGAAGAATATCTTTGTCATTGCGGTGGATTGTGATTCCATCTCTTCTATGATTGAAGTCACTAGGAAAATTTTTGAGGCTGTTGAAAAGGAAAGCGCCC AGGGGTCCATTGGGTTCATTTTGTCCACATCTATGACCATAACTGAGACGGAGTCATTTCTTGCTTCTGGAGGATTTAATGCAAGAGATTTTGATGCTTT TATCTGCAACAGTGGTAGCGAACTCTATTACTCGACTCCCAGTTCAGAAGACAGTCCGTTCGTGGTGGATTTCTATTACCACTCGCATATTGAGTATCGT TGGGGAGGTGAAGGTCTGAGGAAGACTCTCGTAAGATGGGCATCTTCGGTTACTGACAAGAAGGCTGAAAGTGAAGAAAAGATTATCATTCCATCTGAAC AACTTTCAACCAACTATTGCTATGCTTTTAAAGTCCAAAGCCAGAAGCCGGGGCTGGTTCATCCGGTCAAGGAACTTCGGAAGGCACTTCGTATTCAGGC ACTTCGATGCCATGTTATTTATTGCCAGAATGGTAACAGGATAAATATAATTCCAGTGTTGGCTTCTCGATCCCAAGCCCTTAGGTACCTTTACGTGCGG TGGGGAATCGAGTTAGCAAGCATGGTGGTGTTTGCTGGAGAAAGTGGAGACACAGACTACGAAGGGTTGCTGGGTGGTGTACACAAGAGTGTGGTTCTGA AGGGAGTATGCAGCTCTGCAAACAGCCAACTCCTTCAGAACAGAAGTTACCCACTCTCTGATGTTATAGCCTCTGACGGTCCAAATGTCTCTCATACCTC AGAAGACTGTAGCAGCACCGAAATCCGGGATTCATTGCAGAGGTTGGGATGCATCAAGGCATAG
AA sequence Show only first row Show all	>Lus10008056 pacid=23144294 polypeptide=Lus10008056 locus=Lus10008056.g ID=Lus10008056.BGIv1.0 annot-version=v1.0 MAGNDWINSYLEAILDVGPGLDDAKSSLLLRERGHFSPTRYFVEEVITGFDETDLHRSWAKAQATRSPQERNTRLENMCWRIWNLARQKKQVFFSPYLSS WTLIYLHGLIRGESMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSAPDVDWSYGEPTEMLTLTNIDEDEDEMGESSGAYIVRIPFGPKDKY IEKELLWPHIPEFVDGALSHVIQMSKVLGEQIGGGKPVWPVAIHGHYADAGDSAALLSGALNVPMLFTGHSLGRDKLEQLLTQGRLSREEINSTYKIMRR IEAEELALDASEIVITSTRQEIEQQWRLYDGFDPILERKLRARIRRNVSCYGRFMPRMAVIPPGMEFHHIVPHDGDMEGELEGNEDHPTTPEPQIWPEIM RFFSNPRKPMILALARADPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDEMPSTNASVLLSVLKLIDKYDLYGQVAYPKHHKQADVPEIYRLAAKT KGVFINPAFIEPFGLTLIEAAAYGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQSIANALLKLVADKQLWAKCRQNGLKNIHLFSWPEHCKTYLSRIATC KPRHPQWEQPDDGGDTSDMDSPGDSLRDINDISLNLKFSMDGDKSGENYLESEGNTGDNKSKLENAVLAWSRGVPKESRKTGNTEKGEQSQSSVFPALRR RKNIFVIAVDCDSISSMIEVTRKIFEAVEKESAQGSIGFILSTSMTITETESFLASGGFNARDFDAFICNSGSELYYSTPSSEDSPFVVDFYYHSHIEYR WGGEGLRKTLVRWASSVTDKKAESEEKIIIPSEQLSTNYCYAFKVQSQKPGLVHPVKELRKALRIQALRCHVIYCQNGNRINIIPVLASRSQALRYLYVR WGIELASMVVFAGESGDTDYEGLLGGVHKSVVLKGVCSSANSQLLQNRSYPLSDVIASDGPNVSHTSEDCSSTEIRDSLQRLGCIKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11110		SPSA2, KNS2, AT...	sucrose-phosphate synthase A2,...		Lus10008056 [exp]	0	1
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Lus10038119 [exp]	1.0	0.9745
AT4G09810			Nucleotide-sugar transporter f...		Lus10006810 [exp]	2.2	0.8253
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10037825 [exp]	2.4	0.8435
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Lus10024989 [exp]	2.8	0.8810
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10032853 [exp]	6.8	0.7719
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10002346 [exp]	9.4	0.7721
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10033610 [exp]	10.2	0.7726
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10016003 [exp]	10.4	0.8245
AT2G34180		ATWL2, CIPK13, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025396 [exp]	10.6	0.8103
AT3G02870		VTC4	Inositol monophosphatase famil...		Lus10039046 [exp]	10.8	0.7630

Compare expression of checked genes

Lus10008056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.