Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20270 379 / 3e-131 HHP1 heptahelical transmembrane protein1 (.1) AT4G37680 281 / 6e-92 HHP4 heptahelical protein 4 (.1.2) AT2G24150 277 / 5e-91 HHP3 heptahelical protein 3 (.1) AT4G30850 276 / 1e-90 HHP2 heptahelical transmembrane protein2 (.1.2) AT4G38320 267 / 8e-87 HHP5 heptahelical protein 5 (.1) AT2G40710 94 / 1e-23 Haemolysin-III related integral membrane protein (.1) AT4G38290 80 / 2e-18 Haemolysin-III related integral membrane protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038120 [exp] 605 / 0 AT5G20270 377 / 3e-131 heptahelical transmembrane protein1 (.1) Lus10010605 [exp] 250 / 8e-80 AT4G37680 464 / 7e-164 heptahelical protein 4 (.1.2) Lus10036605 [exp] 209 / 3e-64 AT4G30850 259 / 3e-84 heptahelical transmembrane protein2 (.1.2) Lus10025206 [exp] 207 / 4e-63 AT4G37680 584 / 0.0 heptahelical protein 4 (.1.2) Lus10011713 [exp] 204 / 1e-61 AT4G37680 585 / 0.0 heptahelical protein 4 (.1.2) Lus10035823 [exp] 108 / 3e-25 AT4G30920 776 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1) Lus10007709 [exp] 51 / 1e-07 ND 47 / 2e-10
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G124754 [exp] 490 / 4e-174 AT5G20270 384 / 4e-133 heptahelical transmembrane protein1 (.1) Potri.T124407 [exp] 488 / 2e-173 AT5G20270 385 / 2e-133 heptahelical transmembrane protein1 (.1) Potri.006G064400 [exp] 471 / 4e-167 AT5G20270 369 / 2e-127 heptahelical transmembrane protein1 (.1) Potri.018G102400 [exp] 313 / 1e-104 AT4G30850 374 / 5e-129 heptahelical transmembrane protein2 (.1.2) Potri.014G006000 [exp] 284 / 6e-93 AT4G37680 632 / 0.0 heptahelical protein 4 (.1.2) Potri.007G005800 [exp] 213 / 4e-65 AT4G37680 611 / 0.0 heptahelical protein 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF03006 [flax] [poplar] HlyIII Haemolysin-III related
Representative CDS sequence Show only first row Show all	>Lus10008057 pacid=23144273 polypeptide=Lus10008057 locus=Lus10008057.g ID=Lus10008057.BGIv1.0 annot-version=v1.0 ATGACTGGGTTAGCAATGAAGAGGATCATAAGGCGCGCAAAGAAGAAGAGGAGGCAACAGCAGCAGGAATTAGAAGCCATGATGGATCATCAATCTCAAG AGGGTATTATTAATACTAGTCCTGCTGCTGACAGTAGTCGTAGCAGCGAGGAGAAGAAAAAGAAGAAGAAGAGATCGCCGTCATCACAAGTTTGTAAACT GGTGTCGTTTTGGGAGCTGCCCGATTACATGAAGGACAATGAGTTCATTCTGGGTTACTACAGAGCCGATTGGCCTCTTAAGGAAGCTCTCTTCAGTGTT CTCCGATGGCATAACGAGACATTAAATGTTTGGTCGCATCTTATTGGCTTCTTGCTGTTTTTGGGGTTGACGATGGCCAATTTAGTGCAAGCTCCTCAAG TAGCGGATCTATTCGGCTTTTTCACCAGGTCCGTCATTACCAGCACTCAAAGAAACGTCTCCCGCGATTCAAAGTACCATTTACTGGGGACAATAAACCT GAAGCAAATCTCGAGCCAATCCATGGAGCAGCACCAAACCCACCTTGCAGAGCGGTGGCCGTTCTTTGTTTTCCTAGCCGGATCAATGTTCTGCCTCCTC TCCAGTACAATCTGCCACCTCTTCTCCTGCCACTCCCACCGCCTGAACACAACCCTACTCCGAATCGACTACGTCGGAATCGCCGTCATGATAATCACCT CCTTCTTTCCGAACATCTACTACGTCTTCCAGTGCGACCCGCACTGGCAAATCGCTTACCTCGCAGCCATCACCGCCATGGGGATCTTCACAATTGCGAC GCTCCTAACACCTTATCTCTCCACGGCAAAATTCCGGGGGCTCCGAGCTCTCCTCTTTGTTTCCATGGGACTCTTCGGAATCGTCCCGGCGATACACGCC GGAGTCGTCAATTGGTCAAACCCTAAGCGCGACGCCGTTTTGAAGTACGAAGGTGCAATGGCTCTGTTTTATTTGACGGGAACCGGGTTTTATGTGGCGC GGGTGCCCGAGCGGTTTAAACCGGGATGGTTCGACTTGGCGGGTCATAGCCACCAGATATTCCATGTGCTTGTGGTGCTGGGTGGGCTGGCGCATTATGG TTCCGCTCTTGTGTTCTTGGAGTATCGTGACCAAGTCGGCTGCTAA
AA sequence Show only first row Show all	>Lus10008057 pacid=23144273 polypeptide=Lus10008057 locus=Lus10008057.g ID=Lus10008057.BGIv1.0 annot-version=v1.0 MTGLAMKRIIRRAKKKRRQQQQELEAMMDHQSQEGIINTSPAADSSRSSEEKKKKKKRSPSSQVCKLVSFWELPDYMKDNEFILGYYRADWPLKEALFSV LRWHNETLNVWSHLIGFLLFLGLTMANLVQAPQVADLFGFFTRSVITSTQRNVSRDSKYHLLGTINLKQISSQSMEQHQTHLAERWPFFVFLAGSMFCLL SSTICHLFSCHSHRLNTTLLRIDYVGIAVMIITSFFPNIYYVFQCDPHWQIAYLAAITAMGIFTIATLLTPYLSTAKFRGLRALLFVSMGLFGIVPAIHA GVVNWSNPKRDAVLKYEGAMALFYLTGTGFYVARVPERFKPGWFDLAGHSHQIFHVLVVLGGLAHYGSALVFLEYRDQVGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20270		HHP1	heptahelical transmembrane pro...		Lus10008057 [exp]	0	1
AT5G20270		HHP1	heptahelical transmembrane pro...		Lus10038120 [exp]	3.6	0.7620
AT5G36290			Uncharacterized protein family...		Lus10026995 [exp]	9.1	0.7005
AT1G54460			TPX2 (targeting protein for Xk...		Lus10005533 [exp]	10.0	0.6510
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10036562 [exp]	21.4	0.5845
AT2G38610			RNA-binding KH domain-containi...		Lus10019116 [exp]	29.6	0.6637
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001841 [exp]	33.2	0.6431
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10006581 [exp]	34.0	0.6570
AT4G09830			Uncharacterised conserved prot...		Lus10028732 [exp]	35.7	0.6437
AT4G15470			Bax inhibitor-1 family protein...		Lus10041240 [exp]	42.3	0.6299
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10017751 [exp]	46.6	0.6016

Compare expression of checked genes

Lus10008057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.