Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44520 289 / 1e-97 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT3G04790 99 / 4e-24 EMB3119 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) AT2G01290 86 / 2e-19 RPI2 ribose-5-phosphate isomerase 2 (.1) AT1G71100 83 / 2e-18 RSW10 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032450 [exp] 107 / 4e-27 AT1G71100 362 / 3e-127 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Lus10042951 [exp] 106 / 5e-27 AT1G71100 356 / 4e-125 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Lus10015919 [exp] 99 / 7e-24 AT3G04790 390 / 4e-138 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Lus10036094 [exp] 86 / 3e-19 AT2G01290 342 / 2e-119 ribose-5-phosphate isomerase 2 (.1) Lus10009180 [exp] 85 / 4e-19 AT3G04790 318 / 8e-110 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Lus10026777 [exp] 82 / 4e-18 AT1G71100 344 / 3e-120 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Lus10017770 [exp] 42 / 6e-05 AT3G04790 85 / 2e-21 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G155500 [exp] 341 / 3e-118 AT5G44520 294 / 7e-100 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.005G052000 [exp] 99 / 4e-24 AT3G04790 354 / 9e-124 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Potri.008G127600 [exp] 94 / 3e-22 AT2G01290 365 / 2e-128 ribose-5-phosphate isomerase 2 (.1) Potri.013G039400 [exp] 93 / 8e-22 AT3G04790 379 / 2e-133 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Potri.001G225700 [exp] 92 / 1e-21 AT2G01290 378 / 1e-133 ribose-5-phosphate isomerase 2 (.1) Potri.010G115300 [exp] 90 / 9e-21 AT2G01290 368 / 1e-129 ribose-5-phosphate isomerase 2 (.1) Potri.006G039800 [exp] 66 / 7e-12 AT1G71100 122 / 2e-31 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Potri.006G039700 [exp] 57 / 7e-09 AT3G04790 122 / 2e-31 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [flax] [poplar] ISOCOT_Fold PF06026 [flax] [poplar] Rib_5-P_isom_A Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Representative CDS sequence Show only first row Show all	>Lus10008059 pacid=23170714 polypeptide=Lus10008059 locus=Lus10008059.g ID=Lus10008059.BGIv1.0 annot-version=v1.0 ATGGCTGCAACAACAACAACAATACTAGTACCAAAAACACCTGCTTTGCATCCTACTGCAGCAGCTGAGAGGAGCAGGTCAATAAGAACAAGTCATTCCC AGTTGAGGAGGCGCAACTCATATTCTTTCCCACTGGTCATTCGAGCAACCACCCTCTCACACAACTCCGCCCTCCTCCATGCCGCCAAGCACACTGTTGA TACATACGTTAAGAATGGTATGGTTGTGGGACTCGGGTCTGGACAAGCTTCCTCATTCGCTATACAGTATTTGGGCCAGCAAATTCGTTGTGGAACTTTA CAAGATTTGGTAGGCATACCCATGTCTGTGGCCAGCGCAAGTGAAGCTTCCAAGGCAGGCATTCCTTTGGGTGCATATGAACACACTTCTCATGTCGATT TTGCATTCAATGATGCTGATGTTGTGGAACAAGGAACACTAGTTGCAGTTATTGGTAGACGAAATTTGCGAGAGGATGAATCTATCATTCTAGAGAAGAA AATCCTAAATGCAGCAAGCAAGCTTGTATTCATGGTGACAGAGAAACAATACAAAATTGGTCCAGATGGTTCTATTCCAGTCCTGGTTCACCCTTTGGGT TGGATGGAAACTGCTGAAGAGCTTGATGACTTGTTCATAGGTGATGCAGAGGTATGGAGAAGATCATCCGTAGGACGAGCAGATCCAACAGGGGGCGATT TCCCTTTGATTACGAAAGAAGGTCACAACATCCTGGATCTCATCTTTACTTCTCCAATAAGTCTTGGTGAAGTAGCTGAAACGCTTGACAACGTGAGTGG TGTTGTGGAGCATGGAGTCATTTTGAAATACCCGTTAGTCTTGTTTTTTATACATATAAATTTCATAATGATGAGAGGGATTGTGGTTATTTAA
AA sequence Show only first row Show all	>Lus10008059 pacid=23170714 polypeptide=Lus10008059 locus=Lus10008059.g ID=Lus10008059.BGIv1.0 annot-version=v1.0 MAATTTTILVPKTPALHPTAAAERSRSIRTSHSQLRRRNSYSFPLVIRATTLSHNSALLHAAKHTVDTYVKNGMVVGLGSGQASSFAIQYLGQQIRCGTL QDLVGIPMSVASASEASKAGIPLGAYEHTSHVDFAFNDADVVEQGTLVAVIGRRNLREDESIILEKKILNAASKLVFMVTEKQYKIGPDGSIPVLVHPLG WMETAEELDDLFIGDAEVWRRSSVGRADPTGGDFPLITKEGHNILDLIFTSPISLGEVAETLDNVSGVVEHGVILKYPLVLFFIHINFIMMRGIVVI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44520			NagB/RpiA/CoA transferase-like...		Lus10008059 [exp]	0	1
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10019290 [exp]	1.4	0.9640
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10016811 [exp]	1.4	0.9678
AT4G31115			Protein of unknown function (D...		Lus10026864 [exp]	3.0	0.9589
AT1G49975			unknown protein		Lus10033771 [exp]	3.2	0.9578
AT4G19100		PAM68	photosynthesis affected mutant...		Lus10012152 [exp]	3.5	0.9583
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012886 [exp]	6.7	0.9475
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10027729 [exp]	6.9	0.9540
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043143 [exp]	7.0	0.9488
AT5G48830			unknown protein		Lus10038165 [exp]	9.8	0.9410
AT5G42765			unknown protein		Lus10032714 [exp]	10.4	0.9376

Compare expression of checked genes

Lus10008059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.