Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20430 1011 / 0 Subtilase family protein (.1.2) AT5G44530 1003 / 0 Subtilase family protein (.1) AT1G30600 942 / 0 Subtilase family protein (.1) AT2G19170 550 / 0 SLP3 subtilisin-like serine protease 3 (.1) AT4G30020 545 / 0 PA-domain containing subtilase family protein (.1) AT1G62340 419 / 2e-133 ALE1 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) AT4G34980 275 / 3e-80 SLP2 subtilisin-like serine protease 2 (.1) AT4G10550 271 / 2e-79 Subtilase family protein (.1.2.3) AT3G14240 267 / 3e-77 Subtilase family protein (.1) AT4G10510 265 / 1e-76 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023389 [exp] 1212 / 0 AT4G20430 1173 / 0.0 Subtilase family protein (.1.2) Lus10038416 [exp] 1208 / 0 AT5G44530 1169 / 0.0 Subtilase family protein (.1) Lus10006973 [exp] 526 / 9e-175 AT4G30020 1334 / 0.0 PA-domain containing subtilase family protein (.1) Lus10001006 [exp] 492 / 4e-162 AT2G19170 629 / 0.0 subtilisin-like serine protease 3 (.1) Lus10000960 [exp] 480 / 5e-157 AT4G30020 658 / 0.0 PA-domain containing subtilase family protein (.1) Lus10040146 [exp] 479 / 2e-156 AT2G19170 655 / 0.0 subtilisin-like serine protease 3 (.1) Lus10001310 [exp] 458 / 5e-149 AT4G30020 1258 / 0.0 PA-domain containing subtilase family protein (.1) Lus10015559 [exp] 412 / 8e-131 AT1G62340 903 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Lus10011018 [exp] 339 / 6e-105 AT2G19170 445 / 3e-146 subtilisin-like serine protease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G440300 [exp] 1155 / 0 AT4G20430 1107 / 0.0 Subtilase family protein (.1.2) Potri.011G155400 [exp] 1133 / 0 AT4G20430 1143 / 0.0 Subtilase family protein (.1.2) Potri.006G076200 [exp] 559 / 0 AT2G19170 1342 / 0.0 subtilisin-like serine protease 3 (.1) Potri.018G143400 [exp] 552 / 0 AT4G30020 1338 / 0.0 PA-domain containing subtilase family protein (.1) Potri.001G151100 [exp] 509 / 3e-168 AT2G19170 615 / 0.0 subtilisin-like serine protease 3 (.1) Potri.011G010700 [exp] 283 / 1e-85 AT1G62340 631 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Potri.001G163600 [exp] 282 / 1e-82 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.009G133400 [exp] 273 / 2e-79 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.004G173900 [exp] 273 / 2e-79 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.011G151200 [exp] 270 / 2e-78 AT1G32960 906 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10008060 pacid=23170716 polypeptide=Lus10008060 locus=Lus10008060.g ID=Lus10008060.BGIv1.0 annot-version=v1.0 ATGGGAGGCATTCGCTTACTTCAGTTAGTTACAGTACTGCTATTCTTCGCGGCGGGTGGGCTTTGTCAGAATGAACAAGAGGCTACGGCTGCTGCTGTTT ACATTGTCACTCTTAAGCTTTCCCCTGCTCTTCTTGTTCATCATTTCAGTGAAGAACTAAACAGCGTGAGGAACAATGATCCCCCCGATAAACCAGGTGT ATTCCACAAGCCTAGTAATAACTCGACAAGTGGAAGCCGTGGGTCAATCATAGCTCGTATCCATGATTCGTTATTGAAGAGAGTGTTGCGAGGAGAGAAA TATCTGAAGCTCTATAGCTATCACCATTTGCTTAATGGCTTTGCTGTTTTCCTCACCCCACACCAGGCGAAAAAGCTATCTAGGTTGGAGGAAGTTGCAA ATGTGGTATTGGATTTCTCTGTTAGGAAAGCAACCACACACACCCCTCAGTTCTTGGGGCTTCCAAAAGGTGCATGGGTCAAAGAAGGTGGATATGAGAT TGCTGGGGAAGGAATTGTTATTGCCTTTGTTGATACTGGGATTGATCCTACTCATCCCAGTTTCGCTGATGATGGATCAATGCGGTCTTACCCGGTCCCT CGTGGGTTTTCGGGTGTTTGTGAAGTTACTAAAGATTTCCCTTCTGGTTCATGCAACAAGAAGCTCGTTGGTGCCAGGCATTTTGTAGCATCTGCCATTA CCAGGGGTGTTTTCAACTCTTCCCAAGATTACGCTTCCCCATTTGACGGTGATGGCCATGGAACGCATACAGCCTCTGTTGCTGCAGGAAACCATGGTAT TCCAGTGATTGTGTCCGGCCATCATTTTGGAAATGCGAGTGGCATGGCTCCTCGTGCACATGTTGCTGTTTACAAGGCGCTCTACAAGGGTTTTGGAGGA TTTGCTGCTGATGTTGTTGCTGCTATAGACCAGCTAAATGCCATCTTAATGGTGCAAAACGATGAACATAGTTACGAGAATACCGGGAAAATTCATTCCG TTTTCTGGATAGTCAACTCATGTGGTTTGAGCTGTGTGTGTGCGTCTGAACAGGCAGCCGAGGATAGAGTTGACATCATAAGTTTGTCAATCACACCAAA CAGGCGTCCCCCAGGTATTGCTACATTCTTCAACCCAATTGACATGGCCTTGCTCTCAGCCGTGAAGACTGGCATATTCGTAGTACAAGCAGCAGGAAAT ACTGGGCCCTCACCCAAGAGCATGTCTTCCTTTAGTCCATGGATATTTACTGTTGGCGCTGCTTCTCACGACAGAGTCTACTCCAACTCCATAACTCTTG GAAACAATCTCACTCTTCGGGGCGTTGGCCTTGCGTCAGGAACAAAGAAAGGCACCATGTATACATTGATTTCAGCACTCCATGCATTGAACACTGAGAC ATCTGATATGTACGCGGGAGAGTGCCAAGAATCAAGTAGCTTTGATAAACACATCATCCGAGGAAACCTCTTGATCTGTAGTTATTCAGTTCGATTCGTG CTGGGCCTCTCCACCATCAAGAAAGCCTTAGAAACTGCCCAAAACCTCAGTGCAGCCGGTGTTGTGTTCTGCATGGATCCTTTCGTTCTTGGCTTTCAGC TCAATCCAATTCCTATGAGAATTCCTGGCATCATAATCCCAACTGCAGATGATTCCAAGGCAAAGAGAGGTAAAGATGGCAGTACAATAGTTAAGTTTGG AGCAACTGCTAGCATTTTAGGGGGACTGAGAGCCAACTACAGTAACTCTGCTCCCAAAGTAATGTACTATTCTGCTAGAGGACCAGATCCTGAAGACAGC TCTTTCAATGTTGCTGATATTCTGAAACCTAACTTGGTTGCTCCTGGGAACTCAATATGGGCTGCCTGGAGCTCTCTAGGAACCGATTCAGTTGAATTCC AAGGTGAGAAGTTTGCAATGATGTCTGGAACAAGCATGGCAGCTCCTCACATTGCTGGGCTTGCTGCTCTCATCAAGCAAAAGTTCCCAGCTTTCACCCC TTCAGCAATTGCTTCTGCACTCTCCACAACAGCCACAATATGGGACAAGGGTGGTGGTGCAATAATGGCTCAACGGGCCTATTCTAACCCAGATGTAAAT CAGTCCCCAGCAACCCCATTTGACATGGGCAGCGGTTTTGTGAGCGCAACGGGTGCTCTTAACCCCGGTTTGATCTTCGATACAAGCTACGATGACTATA TGTCCTTCATTTGTGGTATCAATGGATCGGGACCTGTAGTCATGAACTTCACCGGCCAAAACTGTGGGATGTACAACTTAACCATCACTGCAGCTGATCT TAACCTGCCCTCTATAACGATTGCAAAGCTCGACCAGACAAAGACAGTGGTAAGATCTGTGACCAATGTGGGTGGGAATGAGACGTATGCTGTTGGCTGG ACTGCACCTTATGGTGTTTATGTGAAGGTGGCGCCTACTCATTTCACAATAAGAAGCAACGAGAAGCAAGTGTTGACTGTTACCATCACGGCGAAGATGA ACAGCTCGGCTCCTAGCTATGGGAGGATCGGGGTACTGGGAGATCAAGGTCATGCGATCAACATTCCATTAGTTGTGATTGCCAAAACTTGTTATAATAC CACTACTTAA
AA sequence Show only first row Show all	>Lus10008060 pacid=23170716 polypeptide=Lus10008060 locus=Lus10008060.g ID=Lus10008060.BGIv1.0 annot-version=v1.0 MGGIRLLQLVTVLLFFAAGGLCQNEQEATAAAVYIVTLKLSPALLVHHFSEELNSVRNNDPPDKPGVFHKPSNNSTSGSRGSIIARIHDSLLKRVLRGEK YLKLYSYHHLLNGFAVFLTPHQAKKLSRLEEVANVVLDFSVRKATTHTPQFLGLPKGAWVKEGGYEIAGEGIVIAFVDTGIDPTHPSFADDGSMRSYPVP RGFSGVCEVTKDFPSGSCNKKLVGARHFVASAITRGVFNSSQDYASPFDGDGHGTHTASVAAGNHGIPVIVSGHHFGNASGMAPRAHVAVYKALYKGFGG FAADVVAAIDQLNAILMVQNDEHSYENTGKIHSVFWIVNSCGLSCVCASEQAAEDRVDIISLSITPNRRPPGIATFFNPIDMALLSAVKTGIFVVQAAGN TGPSPKSMSSFSPWIFTVGAASHDRVYSNSITLGNNLTLRGVGLASGTKKGTMYTLISALHALNTETSDMYAGECQESSSFDKHIIRGNLLICSYSVRFV LGLSTIKKALETAQNLSAAGVVFCMDPFVLGFQLNPIPMRIPGIIIPTADDSKAKRGKDGSTIVKFGATASILGGLRANYSNSAPKVMYYSARGPDPEDS SFNVADILKPNLVAPGNSIWAAWSSLGTDSVEFQGEKFAMMSGTSMAAPHIAGLAALIKQKFPAFTPSAIASALSTTATIWDKGGGAIMAQRAYSNPDVN QSPATPFDMGSGFVSATGALNPGLIFDTSYDDYMSFICGINGSGPVVMNFTGQNCGMYNLTITAADLNLPSITIAKLDQTKTVVRSVTNVGGNETYAVGW TAPYGVYVKVAPTHFTIRSNEKQVLTVTITAKMNSSAPSYGRIGVLGDQGHAINIPLVVIAKTCYNTTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20430			Subtilase family protein (.1.2...		Lus10008060 [exp]	0	1
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10009265 [exp]	1.7	0.9226
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	2.8	0.9183
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10036723 [exp]	3.2	0.9004
AT3G20390			endoribonuclease L-PSP family ...		Lus10021523 [exp]	3.5	0.9011
AT3G45900			Ribonuclease P protein subunit...		Lus10034732 [exp]	3.7	0.8924
AT1G06450			Polynucleotidyl transferase, r...		Lus10008043 [exp]	8.8	0.8885
AT5G25590			Protein of unknown function (D...		Lus10038627 [exp]	8.9	0.8810
AT3G10540			3-phosphoinositide-dependent p...		Lus10038647 [exp]	11.7	0.8477
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10037767 [exp]	13.1	0.8425
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Lus10010101 [exp]	14.0	0.8816

Compare expression of checked genes

Lus10008060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.