Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20410 406 / 8e-144 GAMMA-SNAP, GSNAP gamma-soluble NSF attachment protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013109 [exp] 538 / 0 AT4G20410 439 / 5e-157 gamma-soluble NSF attachment protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G155200 [exp] 451 / 1e-161 AT4G20410 383 / 9e-135 gamma-soluble NSF attachment protein (.1) Potri.001G440600 [exp] 451 / 3e-161 AT4G20410 375 / 2e-131 gamma-soluble NSF attachment protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008061 pacid=23170729 polypeptide=Lus10008061 locus=Lus10008061.g ID=Lus10008061.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCTGATCCCGACAAGCTCGTTGCCAAGGCTGATAAACTGACAAAGCTTACCCTTACAAGGTGGAGTGCTGATTGGAGAAACGCCACTCTTT TCTACGAGCAAGCTGATTTCCCTTCTAATGATTGTACTAGTGCAGGAAATGCGTATAGAGTAGCTAAGAAGTATGAAAAAGCAAAAGATGCATTTGAAAA GGCTTCCAAAGGGCAAGAGATGCTCTCCTCTCCCTGGGATGCTGCTAAGCATATGGAGTCTGCTGCTGCTCTAGCGAAAGAGGTAGGTAACTGGAGCCAA GTAGCTGATTTGTACAGAAGAGCATCGGAGTTGTACATTGAGTGTGGGAGGTCACAACCTGCATCAGATGCTCTAGGGAAGGCAGCTCGTGCTGTGGAAG ATCATTTGCCTGATGTTGCTCTTCAGCTGTATACTGATGCTTGTGAAATTCTGGAAGAGGATGACAAGGAACAAATGGCCTTCGATCTATACCGCGCTCT AACTGCTGTCCACATTAAACTTGAAAAGTACACGGATGCTGCAGCTTCCTTGTTGAGACTGGGTCTTGCAGCTGACAAATGTAATGCTACCAATAGCCAG TGCAAGGCATACCTCGGTGCGATTGTGCTATATCTGTATGCTAATGATGTCAAGGCGGCAGGGAAATGCTATAATGACTGCTCACAGATTGCTGCCTTCT TGGGAAGTGACCAAGGCCGATGTGCTAGTAAGCTTCTTTCAGCTTATTCGGAAGGCGATGTTGAAGAGATTAAACGTGTAGCCCAGTCTAGCACCATGTC CCATCTTGACCACGTTATAATCAAGCTGGGACGAAAGCTACCTACTGGGGATGTGACGGCAACAAAAGCTGATAGTGAAGAGGGAGAAGCCTTGGACGAG AATGATCTCACATAA
AA sequence Show only first row Show all	>Lus10008061 pacid=23170729 polypeptide=Lus10008061 locus=Lus10008061.g ID=Lus10008061.BGIv1.0 annot-version=v1.0 MSSSDPDKLVAKADKLTKLTLTRWSADWRNATLFYEQADFPSNDCTSAGNAYRVAKKYEKAKDAFEKASKGQEMLSSPWDAAKHMESAAALAKEVGNWSQ VADLYRRASELYIECGRSQPASDALGKAARAVEDHLPDVALQLYTDACEILEEDDKEQMAFDLYRALTAVHIKLEKYTDAAASLLRLGLAADKCNATNSQ CKAYLGAIVLYLYANDVKAAGKCYNDCSQIAAFLGSDQGRCASKLLSAYSEGDVEEIKRVAQSSTMSHLDHVIIKLGRKLPTGDVTATKADSEEGEALDE NDLT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Lus10008061 [exp]	0	1
AT5G57330			Galactose mutarotase-like supe...		Lus10015540 [exp]	9.7	0.8509
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10006626 [exp]	12.5	0.8257
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10005924 [exp]	15.4	0.8429
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Lus10030497 [exp]	23.2	0.8327
AT4G26410			Uncharacterised conserved prot...		Lus10013474 [exp]	26.2	0.7512
AT1G05270			TraB family protein (.1)		Lus10015104 [exp]	28.2	0.8083
AT5G32440			Ubiquitin system component Cue...		Lus10039987 [exp]	32.6	0.8157
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10003539 [exp]	34.4	0.8245
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	41.7	0.8177
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	44.7	0.8154

Compare expression of checked genes

Lus10008061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.