Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20400 899 / 0 PKDM7B, JMJ14 JUMONJI 14 (.1.2) AT1G30810 876 / 0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT2G34880 780 / 0 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT1G08620 629 / 0 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT2G38950 413 / 4e-132 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT1G63490 298 / 8e-86 transcription factor jumonji (jmjC) domain-containing protein (.1) AT5G46910 209 / 1e-56 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT5G04240 179 / 7e-46 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT3G48430 162 / 2e-40 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042566 [exp] 649 / 0 AT3G04490 1382 / 0.0 unknown protein Lus10022024 [exp] 647 / 0 AT3G04490 1370 / 0.0 unknown protein Lus10033903 [exp] 469 / 5e-153 AT1G08620 572 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10003548 [exp] 389 / 7e-120 AT1G08620 455 / 4e-142 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10008495 [exp] 329 / 9e-95 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10008531 [exp] 224 / 3e-60 AT1G63490 796 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10030988 [exp] 212 / 3e-57 AT5G46910 850 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10035385 [exp] 212 / 3e-57 AT5G46910 843 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10019482 [exp] 174 / 3e-44 AT3G48430 984 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G155100 [exp] 1004 / 0 AT4G20400 707 / 0.0 JUMONJI 14 (.1.2) Potri.001G440900 [exp] 841 / 0 AT4G20400 733 / 0.0 JUMONJI 14 (.1.2) Potri.013G046700 [exp] 657 / 0 AT1G08620 1281 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.019G018700 [exp] 645 / 0 AT1G08620 1260 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.002G037300 [exp] 533 / 3e-177 AT1G08620 669 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.003G126600 [exp] 326 / 7e-94 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.001G137700 [exp] 211 / 7e-57 AT5G46910 893 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.003G096100 [exp] 206 / 4e-55 AT5G46910 924 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.012G092400 [exp] 191 / 2e-49 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.015G089000 [exp] 187 / 2e-48 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase CL0029 [flax] [poplar] PF02928 [flax] [poplar] zf-C5HC2 C5HC2 zinc finger CL0029 [flax] [poplar] Cupin PF02375 [flax] [poplar] JmjN jmjN domain CL0029 [flax] [poplar] PF05964 [flax] [poplar] FYRN F/Y-rich N-terminus CL0029 [flax] [poplar] PF05965 [flax] [poplar] FYRC F/Y rich C-terminus
Representative CDS sequence Show only first row Show all	>Lus10008063 pacid=23170731 polypeptide=Lus10008063 locus=Lus10008063.g ID=Lus10008063.BGIv1.0 annot-version=v1.0 ATGGCACAGACGAAATCAACTCCAGATTCCCATGATAAGGAGGAGCATTCCGCTAAACACTCCCCAAAAAATGAGACCACGGTTGACACCCCAAGCAGTC CACGAAATCGCAAGGTAGCTGCCAGATGGGAACCAGATGAACCATGCACACCTGCAGTTGATGACGCACCAGTATTTTATCCTACTGTCGAGGAATTTGA AGATACCCTTAACTACATATCGAAGATACGTGCAATAGCAGAGCCATTTGGCATATGCCGCATTGTTCCTCCATCTTCTTGGAGGCCACCCTGCCGCCTT AAAGAGAAAGAGATATGGGAAAATGCTAAATTTTCTACCCGAATTCAGCAAGTCGACTTACTTCAAAATAGAGAACCTATTAAAAAGAAAAACAAAAGCC GGAAGCGGAAAAGGAGGAGGCATTCAAAAATGGGAAATACAAAGAGACGTGCAACTTCTTGTTCAGGAGTAAATGTTGCTTCTGCTCTTAAAAGTGAGGA GAAGTTTGGTTTCCAGACCGGATCTGATTTTACATTAGATGAGTTTCAGAAATACGCTGATTATTATAAAGCTTGTTACTTTGGAAAAAGAGATTCCAAT GAGGATATCAAGTCTGATCAAAAGTTTGAGCCTTCAGTAGATGACATCGAAGGTGAATATTGGCGTATCATTGAGCAACCAACAGATGAGGTTGAGGTGT ACTATGGTGCCGATTTGGAAACGGGAATATTCGGAAGTGGGTTTCCTAAGGCATCATCAATGACAACAGACCACGACAGCAACCTAGATCAGTATATAGA GTCTGGTTGGAATTTGAACAACTTGCCTCGTCTGCCAGGTTCTGTACTGTGTTTTGAAGAAAGCGATATATCTGGTGTTCTAGTACCTTGGTTGTATGTG GGAATGTGTTTCTCATCATTTTGTTGGCATGTGGAGGATCACCACCTATATTCTCTAAACTATTTACACTGGGGTGACCAAAAGATTTGGTATGGTGTAC CTGGTAGTCATGCTTCAACCTTGGAATCTGCAATGAAAAAGCATTTACCTGATTTGTTTGAAGAACAACCTGATCTACTTCATGGGCTGGTGACTCAACT CTCTCCTTCAGTTCTCAAAGTTGAGGGTGTACCAGTATATAGAGTTGTCCAGCACTCAGGAGAGTTTGTTCTTACCTTCCCTAGGGCATACCATGCTGGT TTCAATTGCGGGTTTAACTGTGCCGAGGCTGTGAATGTGGCCCCCGTTGATTGGTTGTTACATGGACAAAATTCAGTTGAGGGCTATAGTGAGCAACAGC GTAAAACATCTATATCACATGACAAACTGTTATTTGGAGCAGCACTAGATGCACTACTAGAAAATGAATCGTCGAGGTGGACAAGTGTTTGTGGTAGGGA TGGATTGCTCACAAAAGCTATAAAGGCAAGGGTAGAGATAGAGAAGGAGAGAGTACAAGGGCTTCCAACTGAGTTCAAAGTTGAAAAGATGGAAGAAGAT ACTGATTTTAATAGTGAGAGAGAATGCTTCTCATGTTATTATGACTTACATTTATCTGCCGCTACCTGCAAGTGCTGCACTGACCGATTTGCATGTCTTA AACATGCTAAGCATCTTTGTTCTTGTGAAATAGAACAAAGATATGTGCTTGTGCGTTATACGATGGATGAACTAAGTAGTCTCGTTGACGCATTAGAGGG AGACGTAGAAGCTATGCAATTCTGGTCTTGTGAAGCTACTAGGTTGGTTTCTGCTCCTATACAACCGAATCTTGTGGACCTCTCAGTGCTAGGAACCAGT CCTTCATGTGGCTCAAACAGCCATGCTACTACTCCAGATGTAATCCAATCTGACAGTAAAAGTACACCTCCAGAAGAGGTTTGCTTTGACCTCAACGTTG ATGTTATTCATGAGAGGGAATCTATATATGCTTCTGATAGCTCCCGTAGCAGATTGGTACCTGACATGGTTAGTGGGGGCTCAAACTCGTCAGAGTGTTG TCAATTGTCAAAGTCGCCAGAGGATACCAATCTAGTTGGTAAAAGAAAGCTGTTTGGGGTTGATCTAATGTGCCCTCCACCAAACAGCTTGCAGATTGAA GGTTTGAATAACAACACGGTAGTTTCAAATGCATCGAACATATCCAATTGTTCTGTTGAGTTATTGGATTGCGGATCTATTATCTTAAGACGCCATTGGT ACAACAGGCAAGCCATATTTCCTAAAGGATTCAGAAGCCGGACCAAGTACTTGAGCGTGAATGATCCCAAGAAGATTTGCAACTACATCTCGGAGGTCAT TGATGCTGGGCTACTAGGTCCTCTATTCAAGGTGTATATGGAGAAATGTCCAAGCGAGACAGTTACAGATGTGTCAGCAGGGAAGTGCTGGGAAACTGTG TTTCAGAGGGTAAATGAAGAGTCTTTGAGACGGAGTAGGTTAGGAGAGAAAGGGTTTCCCATTCTGCAGAAGAGCAGCAACGGCATTGATGGATTAGAAA TGTTTGGATTTCTTTCTTCATCTGTTGTAGAGGCCATTGAAGCTCTTGATCCAGCCCATCAGTGTAAAGAGTACTGGAATCATAAGCAGCAGCTGAACAC TCTGGAAACCAAGGACGAAGAACAGTCCAACAACAATTCAGGTGAACAAGTAGAAAGAATAATGGAAGGACTGTTGAAGAAAGCAAGTTATGAAGAAATC AAAATAATGAAGAGGATGTTGATGGATAAAGTGCCAGAAAATGGGCAAATAGAGGATTGA
AA sequence Show only first row Show all	>Lus10008063 pacid=23170731 polypeptide=Lus10008063 locus=Lus10008063.g ID=Lus10008063.BGIv1.0 annot-version=v1.0 MAQTKSTPDSHDKEEHSAKHSPKNETTVDTPSSPRNRKVAARWEPDEPCTPAVDDAPVFYPTVEEFEDTLNYISKIRAIAEPFGICRIVPPSSWRPPCRL KEKEIWENAKFSTRIQQVDLLQNREPIKKKNKSRKRKRRRHSKMGNTKRRATSCSGVNVASALKSEEKFGFQTGSDFTLDEFQKYADYYKACYFGKRDSN EDIKSDQKFEPSVDDIEGEYWRIIEQPTDEVEVYYGADLETGIFGSGFPKASSMTTDHDSNLDQYIESGWNLNNLPRLPGSVLCFEESDISGVLVPWLYV GMCFSSFCWHVEDHHLYSLNYLHWGDQKIWYGVPGSHASTLESAMKKHLPDLFEEQPDLLHGLVTQLSPSVLKVEGVPVYRVVQHSGEFVLTFPRAYHAG FNCGFNCAEAVNVAPVDWLLHGQNSVEGYSEQQRKTSISHDKLLFGAALDALLENESSRWTSVCGRDGLLTKAIKARVEIEKERVQGLPTEFKVEKMEED TDFNSERECFSCYYDLHLSAATCKCCTDRFACLKHAKHLCSCEIEQRYVLVRYTMDELSSLVDALEGDVEAMQFWSCEATRLVSAPIQPNLVDLSVLGTS PSCGSNSHATTPDVIQSDSKSTPPEEVCFDLNVDVIHERESIYASDSSRSRLVPDMVSGGSNSSECCQLSKSPEDTNLVGKRKLFGVDLMCPPPNSLQIE GLNNNTVVSNASNISNCSVELLDCGSIILRRHWYNRQAIFPKGFRSRTKYLSVNDPKKICNYISEVIDAGLLGPLFKVYMEKCPSETVTDVSAGKCWETV FQRVNEESLRRSRLGEKGFPILQKSSNGIDGLEMFGFLSSSVVEAIEALDPAHQCKEYWNHKQQLNTLETKDEEQSNNNSGEQVERIMEGLLKKASYEEI KIMKRMLMDKVPENGQIED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30810			Transcription factor jumonji (...		Lus10008063 [exp]	0	1
AT1G03055			unknown protein		Lus10018752 [exp]	12.7	0.8064
AT1G18835	ZF_HD	MIF3	mini zinc finger 3, mini zinc ...		Lus10002058 [exp]	29.6	0.7883
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10002581 [exp]	40.8	0.7869
AT1G27040			Major facilitator superfamily ...		Lus10032876 [exp]	110.9	0.7017
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10043119 [exp]	114.5	0.7262
AT1G68185			Ubiquitin-like superfamily pro...		Lus10034627 [exp]	132.1	0.7126
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10034099 [exp]	133.4	0.7170
AT3G22490			Seed maturation protein (.1)		Lus10042604 [exp]	144.7	0.7294
AT2G19460			Protein of unknown function (D...		Lus10006019 [exp]	213.1	0.6995
AT1G16270			Protein kinase superfamily pro...		Lus10031749 [exp]	214.0	0.7050

Compare expression of checked genes

Lus10008063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.