Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20380 212 / 6e-70 LSD1 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) AT1G32540 177 / 2e-56 LOL1 lsd one like 1 (.1.2.3) AT4G21610 93 / 9e-24 LOL2 lsd one like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023392 [exp] 262 / 7e-90 AT4G20380 210 / 6e-70 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10000782 [exp] 259 / 2e-89 AT4G20380 160 / 4e-51 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10038409 [exp] 236 / 2e-77 AT1G32540 179 / 2e-55 lsd one like 1 (.1.2.3) Lus10035361 [exp] 176 / 3e-56 AT1G32540 233 / 5e-80 lsd one like 1 (.1.2.3) Lus10030969 [exp] 176 / 3e-56 AT1G32540 236 / 5e-81 lsd one like 1 (.1.2.3) Lus10040081 [exp] 178 / 8e-56 AT1G32540 227 / 3e-76 lsd one like 1 (.1.2.3) Lus10020766 [exp] 86 / 1e-20 AT4G21610 133 / 3e-40 lsd one like 2 (.1) Lus10028157 [exp] 42 / 0.0002 AT1G02170 540 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G442400 [exp] 261 / 9e-90 AT4G20380 195 / 3e-64 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Potri.011G154800 [exp] 254 / 4e-87 AT4G20380 205 / 5e-68 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Potri.003G090300 [exp] 179 / 2e-57 AT1G32540 194 / 1e-64 lsd one like 1 (.1.2.3) Potri.001G143900 [exp] 176 / 4e-56 AT1G32540 189 / 9e-63 lsd one like 1 (.1.2.3) Potri.004G043100 [exp] 81 / 2e-19 AT4G21610 131 / 7e-40 lsd one like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06943 [flax] [poplar] zf-LSD1 LSD1 zinc finger
Representative CDS sequence Show only first row Show all	>Lus10008066 pacid=23170717 polypeptide=Lus10008066 locus=Lus10008066.g ID=Lus10008066.BGIv1.0 annot-version=v1.0 ATGGAAGGAATGTCTTGTAAACCTGTTCTTGCCTTGTTTCAGAGATATGATTATCACATAATCTGTAGGCAGAGTAGGTGCTCATACATACATAACTACT GTTTGGACGACTTTTGTTATATTGTTCTTACTTATGTTTACATTTCAAATGCAGCTATGCAGAGCCAGTTAGTGTGTAATGGGTGCAGGAGCGTTCTTCT TTATCCAAGAGGAGCTTCAAATGTTTGTTGCGCTTTATGTAATACAATTACATCAGTCCCTCCTCCAGGGATGGACATGTCCCAACTTATATGTGGAGGT TGCAGGACATTGCTAATGTATACTCGTGGAGCAACAAGCGTCAGATGCTCCTGCTGTCACACTGTGAACCTTGCGCCAGTATCTAATCAGGTGGCTCACA TAAACTGTGGGAACTGCCGGACAACGCTTATGTATCCATATGGAGCTCCATCCGTGAAGTGTGCAGTCTGTCACTTTGTTACTAATGTCACTATTTCAAA TGTGAGGGTTCAACAAAGACCAAACGGTCAAGGTGCTATGGTGCCATCTACGTCCTCAGCAATGCCGCAATCACAAACACAGACAGTTGTCGTTGAAAAC CCAATGTCGGTGGATGAGAGTGGCAAATTGGTGAGCAATGTGGTTGTTGGAGTCACCACCACAGACAAAAAATAA
AA sequence Show only first row Show all	>Lus10008066 pacid=23170717 polypeptide=Lus10008066 locus=Lus10008066.g ID=Lus10008066.BGIv1.0 annot-version=v1.0 MEGMSCKPVLALFQRYDYHIICRQSRCSYIHNYCLDDFCYIVLTYVYISNAAMQSQLVCNGCRSVLLYPRGASNVCCALCNTITSVPPPGMDMSQLICGG CRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHINCGNCRTTLMYPYGAPSVKCAVCHFVTNVTISNVRVQQRPNGQGAMVPSTSSAMPQSQTQTVVVEN PMSVDESGKLVSNVVVGVTTTDKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10008066 [exp]	0	1
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10041273 [exp]	1.0	0.9657
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10036931 [exp]	4.0	0.9153
AT2G18210			unknown protein		Lus10041771 [exp]	7.3	0.9342
AT5G22390			Protein of unknown function (D...		Lus10020626 [exp]	8.9	0.9080
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10015349 [exp]	14.7	0.9113
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	18.3	0.9167
AT5G25240			unknown protein		Lus10006290 [exp]	19.7	0.9284
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015208 [exp]	26.8	0.9208
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024061 [exp]	29.5	0.9015
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10023460 [exp]	32.9	0.9288

Compare expression of checked genes

Lus10008066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.