Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11720 1048 / 0 Glycosyl hydrolases family 31 protein (.1) AT1G68560 732 / 0 AXY3, TRG1, XYL1, ATXYL1 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) AT3G45940 708 / 0 Glycosyl hydrolases family 31 protein (.1) AT5G63840 311 / 7e-91 PSL5, RSW3 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) AT3G23640 297 / 2e-85 HGL1 heteroglycan glucosidase 1 (.1.2) AT5G44550 132 / 6e-35 Uncharacterised protein family (UPF0497) (.1) AT4G20390 125 / 2e-32 Uncharacterised protein family (UPF0497) (.1) AT4G03540 60 / 4e-10 Uncharacterised protein family (UPF0497) (.1) AT1G03700 59 / 7e-10 Uncharacterised protein family (UPF0497) (.1) AT5G15290 57 / 5e-09 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038408 [exp] 1038 / 0 AT5G11720 1150 / 0.0 Glycosyl hydrolases family 31 protein (.1) Lus10034315 [exp] 756 / 0 AT1G68560 1454 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10041457 [exp] 748 / 0 AT1G68560 1455 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035020 [exp] 746 / 0 AT1G68560 1238 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10035019 [exp] 720 / 0 AT1G68560 1195 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Lus10000779 [exp] 618 / 0 AT5G11720 473 / 1e-160 Glycosyl hydrolases family 31 protein (.1) Lus10000780 [exp] 301 / 9e-96 AT5G11720 140 / 1e-38 Glycosyl hydrolases family 31 protein (.1) Lus10033490 [exp] 289 / 8e-83 AT5G63840 1444 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Lus10020887 [exp] 278 / 5e-79 AT5G63840 1435 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G154300 [exp] 1120 / 0 AT5G11720 1194 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.001G442800 [exp] 1104 / 0 AT5G11720 1167 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154500 [exp] 1094 / 0 AT5G11720 1215 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.011G154200 [exp] 1092 / 0 AT5G11720 1189 / 0.0 Glycosyl hydrolases family 31 protein (.1) Potri.008G120000 [exp] 750 / 0 AT1G68560 1465 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.010G125800 [exp] 741 / 0 AT1G68560 1422 / 0.0 thermoinhibition resistant germination 1, altered xyloglucan 3, alpha-xylosidase 1 (.1) Potri.007G100000 [exp] 296 / 2e-85 AT5G63840 1427 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.001G129600 [exp] 290 / 1e-82 AT3G23640 1463 / 0.0 heteroglycan glucosidase 1 (.1.2) Potri.005G069000 [exp] 284 / 5e-81 AT5G63840 1405 / 0.0 RADIAL SWELLING 3, PRIORITY IN SWEET LIFE 5, Glycosyl hydrolases family 31 protein (.1) Potri.001G442300 [exp] 162 / 3e-45 AT5G44550 173 / 4e-55 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01055 [flax] [poplar] Glyco_hydro_31 Glycosyl hydrolases family 31 CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10008067 pacid=23170724 polypeptide=Lus10008067 locus=Lus10008067.g ID=Lus10008067.BGIv1.0 annot-version=v1.0 ATGTCAGTGAACAAAGAAACTAAAACCTTTGTAGTTGGTACTGTTGGGACAACCCCTATTACTGCTTCTATCACTGCTAAGTTCTCACATACCCCTGCCA ATGTGTTCTTTGTGATAGCAAACGCAATGGCTAGCAACCACAACTTCATGATGATTGGTTCCGAGTTGTTGGGGCTTGATTATAAGGGGCTCAAACTCCC CTTAGTACCAGTTCTTGACATGTTAAACGCGGTTCTGCTATCAGCGGGAGTGAATTCGGCAGGGTTCATGGCGCAGCTTGCAAAGAATGGTAACTCGCAC GCTAGATGGAATGAGATATGTGACAACTTTGAAGGGTACTGCAACCGTGGAGGGATAGCCATTCTTGGTTCCTACGTTGGGATGCTTATAACGTTACTAA TAACGGTCATCTCCATCGTTAAGCTCATAACAATGGAGAGAAGAAACAAGCCTTCTTCAAATCCTCTCCTTCCTTTCCTCATTTTCTCATGTTCATTTCT TCTTCACATTCCCCTCTCTTATGTTTCAGCAGCAGCACAACAAGTAGTCGGGTATGGCTACTCCCTCGGAGACGTCTCCGTCGACTTAGTTACCAACTCC TTGACCGCCGATCTTAATCTTATCCAAACCTCCTCTCTTTACGGACCTGACATTCCCACTCTCATCTTCTCCGCCTGCTTCGATACCGAGAAGCGACTGC GGATTCGAATCTCCGATCCCGAGACCGCCAGATGGGAGATCCCGGAACCAATCATTCCCCGCCGCCCCAGAGGCCACGGCGTCATGCTGCAGGAAGACAC CGGAGTCTTCTCCCACCCGCGTTCCGACCTCGTCATCGCCATCCAGAACACCGAGCCTTTCGGATTTACCGTCTCCAGGAAGTCCACCGGCGACGTCTTG TTCGATTCGTCGCCAGAGGGCTCCGATTCGTCCACCTACCTGGTGTTCAAGGACCAGTACATCCAGCTGTCTTCAAAGCTCCCTGGGAATCGATCTTCAA TCTACGGCCTAGGGGAGCACACCAAGCCCAATTTTAAGTTGACTCCTAATCAGACGTTGACGCTGTGGAACGTTGACCAAGCCAGCTCCACACTCGATGT CAATCTGTACGGCTCTCATCCGTTCTACATCGACGTCAGGTCGCCGTCAGAGGACGGGAAAGTAGCGGCGGGAACCACTCACGGCGTGCTGCTGCTGAAT AGCAACGGGATGGATGTCGTTTATACAGGGGACAGGATAACGTACAAGGCTATCGGCGGGATTATAGACTTGTACATTTTCGCCGGGGAGTCGCCCGTGG ATGTGATTGAGCAATACACTGAGTTCATTGGCCGCCCAGCTCCGATGCCGTATTGGTCGTTCGGATTTCATCAATGCAAATACGGATACAAGAATCTTTC GGAGGTTGAGGCGGTGGTTGCCGGATACGCCAAAGCTGGGATCCCTCTGGAAGTCATGTGGACTGATATTGATTACATGGATGCTTACAAGGATTTTACT CTTGATCCTGTTACCTTCCCTGTTATGCAGATGAGGAACTTCGTCAACAGACTTCACCAATTTGGCCAGAAGTTTGTGCCCATTCTGGATCCAGGTATCA GTGTGAACGACTCATATGGGACGTACATCCGTGGAGTGGAAGCAGATATCTTCATCAAACGAGACGGAGCGCCTTACTTGGGAGAAGTATGGCCAGGAAA AGTATACTTCCCAGATTTCCTGAATCCAAACGCATCAGATTTCTGGAGGGAAGAAATCCAGCGGTTTCTATACATTCTGCCCATTGATGGTCTATGGATA GACATGAATGAACTTTCCAATTTCATCACTTCAACACCAACTCCCAACTCAACCCTTGACCATCCACCTTACATGATTAACAATGGTGGTAATCACAGAC CCATCGTCAACAAAACGACCCCTGCAACTTGCCTTCACTCTGGTAATGTAACGGAGTACAATGTCCACAACATGTACGGCCTGCTCCAAGCCAGAGCAAC TAACGATGCCCTGATCAGAACGACAGGGAAACGCCCATTTGTACTGTCTAGATCAACCTTTGTTAGTTCTGGAAAGTACGCGGCGCATTGGACTGGAGAC ATTGCTTCCACTTGGGAAGACTTGGCCAACACCATCCCTTCCATTTTGAATTCAGGTTTGTTTGGGATTCCAATGGTGGGTGCTGATATATGTGGCTTCT TATTAAACACAACGGAGGAGCTCTGCCTGCGTTGGATTCAGCTGGGAGCTTTCTATCCATTTGCAAGAGACCATTCGGACAAAAACACCATCAGGCAAGA GCTGTACGTGTGGGAATCAGTGGCTGAAGCGGCTAGGAAGGCTCTCGGACTTCGGTACAAGCTGTTACCATATCTGTACACATTGATGGCGGAGGCAAAC CAGAGAGGAACTCCAATAGCAAGGCCACTCTTCTTTTCCTTCCCGGAGGATACAAACACCTACAAAATCAACTCCCAGTTTCTTCTCGGGAGCGGTGTGA TGATCACCCCTGTGGTTAAGCAAGGAGCAGTTTCTGTGAAGGGATACTTCCCTGCAGGGGTTTGGTTTGATCTCTTTGACCATTCCAACGGCACCATAGT GGTGAGCTCGGGAAATTACGTGACTCTGGAGGCTTCACCTGATCATATAAATGTTCACTTGAAAGACGGCTACATAGTTCCAATGCAAGGGGAAGGAATG ACGACTAGGGAAGCTAGAGCGACACCGTTCCACCTCTTGGTTGCTGTAAGTAGCAATGGAAGCAGCAGTAGCAGCAGCAGGGGAGAGGTGTACTTGGACG ATGGGGAGAGGGTGGAGATTGGAGAAGAAGGTGGGGATTGGATGAAAGTGAGGTTTGAAGGTGGGGCTATAGGAAACAGAGCTTACGTTAACTCAGAGGT GATTAATGGAAGGCGATTTGGGTCGAGAAACTCGGGATGGATTATTAAGAGAGTGAGTTTCTTAGGGTTGAACAAGGATGTCCATCAGGTTGGCCGGGAA TATGACGTTTCTATATCGAAGGGTTCGAATTTGAGAGGCAGCAACTCAGTAGTGGTAAAGGTAAAGCCTATATGCCACTCCAACTTGGTGACTGTTGAGA TATCTCAACTTTCCCTTATAGTGGCTCAAGGCTTCAGCCTTGACCTCAAACTAATATAG
AA sequence Show only first row Show all	>Lus10008067 pacid=23170724 polypeptide=Lus10008067 locus=Lus10008067.g ID=Lus10008067.BGIv1.0 annot-version=v1.0 MSVNKETKTFVVGTVGTTPITASITAKFSHTPANVFFVIANAMASNHNFMMIGSELLGLDYKGLKLPLVPVLDMLNAVLLSAGVNSAGFMAQLAKNGNSH ARWNEICDNFEGYCNRGGIAILGSYVGMLITLLITVISIVKLITMERRNKPSSNPLLPFLIFSCSFLLHIPLSYVSAAAQQVVGYGYSLGDVSVDLVTNS LTADLNLIQTSSLYGPDIPTLIFSACFDTEKRLRIRISDPETARWEIPEPIIPRRPRGHGVMLQEDTGVFSHPRSDLVIAIQNTEPFGFTVSRKSTGDVL FDSSPEGSDSSTYLVFKDQYIQLSSKLPGNRSSIYGLGEHTKPNFKLTPNQTLTLWNVDQASSTLDVNLYGSHPFYIDVRSPSEDGKVAAGTTHGVLLLN SNGMDVVYTGDRITYKAIGGIIDLYIFAGESPVDVIEQYTEFIGRPAPMPYWSFGFHQCKYGYKNLSEVEAVVAGYAKAGIPLEVMWTDIDYMDAYKDFT LDPVTFPVMQMRNFVNRLHQFGQKFVPILDPGISVNDSYGTYIRGVEADIFIKRDGAPYLGEVWPGKVYFPDFLNPNASDFWREEIQRFLYILPIDGLWI DMNELSNFITSTPTPNSTLDHPPYMINNGGNHRPIVNKTTPATCLHSGNVTEYNVHNMYGLLQARATNDALIRTTGKRPFVLSRSTFVSSGKYAAHWTGD IASTWEDLANTIPSILNSGLFGIPMVGADICGFLLNTTEELCLRWIQLGAFYPFARDHSDKNTIRQELYVWESVAEAARKALGLRYKLLPYLYTLMAEAN QRGTPIARPLFFSFPEDTNTYKINSQFLLGSGVMITPVVKQGAVSVKGYFPAGVWFDLFDHSNGTIVVSSGNYVTLEASPDHINVHLKDGYIVPMQGEGM TTREARATPFHLLVAVSSNGSSSSSSRGEVYLDDGERVEIGEEGGDWMKVRFEGGAIGNRAYVNSEVINGRRFGSRNSGWIIKRVSFLGLNKDVHQVGRE YDVSISKGSNLRGSNSVVVKVKPICHSNLVTVEISQLSLIVAQGFSLDLKLI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11720			Glycosyl hydrolases family 31 ...		Lus10008067 [exp]	0	1
AT3G10540			3-phosphoinositide-dependent p...		Lus10028834 [exp]	8.4	0.7789
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	9.1	0.7844
AT2G25870			haloacid dehalogenase-like hyd...		Lus10038133 [exp]	24.5	0.7540
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10036522 [exp]	25.7	0.7662
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10005771 [exp]	25.8	0.7587
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Lus10003734 [exp]	26.8	0.6820
AT1G09820			Pentatricopeptide repeat (PPR-...		Lus10032789 [exp]	40.3	0.7427
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10015068 [exp]	45.5	0.7434
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	46.6	0.7265
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10002721 [exp]	50.9	0.7212

Compare expression of checked genes

Lus10008067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.