Plant FIBer expression Database

Lus10008068 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019466
[exp]
74 / 2e-13 ND /
Lus10043316
[exp]
46 / 0.0001 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G153800
[exp]
519 / 2e-177 ND /
Potri.001G443025
[exp]
336 / 1e-110 ND /
Potri.015G084300
[exp]
82 / 4e-16 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02833 DHHA2 DHHA2 domain
Representative CDS sequence
>Lus10008068 pacid=23170720 polypeptide=Lus10008068 locus=Lus10008068.g ID=Lus10008068.BGIv1.0 annot-version=v1.0
ATGAAGCCCGCTGATAAACCAATTTCTTCGCAACCATATGTTCGGGCTCGAGAATCGTCGTTATTTAATGGACTTCTAACTCGGTCTAGGAGTCCGACCA
CTGACTTTGAACAGATTTCAACCAGCAGTGGAAGCGGAAGCCGAAGTGGAAGTAGCAGCGGAAGTCCACCGGTGACTTCTTCTAGGTTTCTTTCTGATGT
CGGCAATCAAATTTCCACAATTCAAAGCAGTGGAAAATCGATTCCGGGTGAGGAAGAAAGGTCGGATGAGTCCCCTCCGTTGGAGTCTGACATGACAGGT
CCAGATATTGTGCTTGAAATTCAAACAGTTCGACGTTCCTCGTTCCGGCATTCATCCGATGGCAAGCAAACTGTTTCATCTGGATTCCAGCGGTCTCGCT
CTGTCAGAAACGACTCAGGTTATGCATCCAACCCAGTGAACAAGGAAAGCGCTTCGTCTGGATTCTCGAGGTCGGCTTCCTACAATGTAAATTTCGATTT
AAGCGGCTCATCTGATTCAGGGTGTGAACCCAAGTACCTGACTGAGGAAACTGCAACTGCTAGATTGCCCAAGTCGCATTCCCGCCAATATAACCTGGAA
ACTAGCAGCACGGATGATTCAGGGAATGAACCCAAACTTTTGGTTAAGCCATCCAAGTCTTTTGCAGGACTTCCCAGGTCTCGTTCTCACAATGTGAAGG
TCGACTCAAGCGCCAGAAAGGATAAGCTGACTGGAGTCCTGGGATCTCGTTCATTCAGTTTGGCTGGCGATTCAAGTGGCTCAGTCAATTCAGGGAATGA
AGCTAAGCCTTTGGGTAAGACAGTTGAAGCACCCAAGGAGGGTCATGCTCCTACGATAGAAGGATCTATTGTGAAAACTCCTGGTGTCCATCCTGAAAGA
TTGTTTCATTTATGTGAAAGTAAGCCAAGCCCATCCAAGGTTCCACTCCCTCAATCTGCAGCATCATTTTACGCTGGATTTTCGTTACAGCTCTTCCAAA
TAGTGGAGTCATGTGAAAGTATGAAGAGGGTGAATCAGTATTTGAAAGCTAGGAAGGACGAGGTCAGAGCTGGTGCACCTGGGAAATTCTTGCAGGCAGT
CCTTGGCCAAGAATCATCAGATATTGGAACGATTGCTTCAACCATTTTATATGCTTTCTACCTGCATGAAACTCTGAGAAATGATCAATTTTGCACTGTG
CCTGTCATCAACATGAAGAGGGAAGACTTAGGATCTCGTGCTGAAATAAGTTGGTTGTTAGGTTCATGCCAAGTGGACGAGTCATCATTGATTTTTGTGG
ATGAGATTGATCTGCATTACTATGACCTTTTCGGGAGTCTTAAGGTTGTTCTGCTGAATGGATACGAACTCCCTGCCAAGCAAGAGGCATTAAAGGGGGC
AGTTATTGAAGTATTTAATTGCCAAAAGGCCGAGTCTATGTATCTTGGGGTTCAACGTGTAACCGTGTCTGAGAATGACTCTTGCTGTACCCTCATTGCG
GAAAAGTTCATGCAATCATCTCTGGATATTTTGGCAGGGGTGGCTTTCAGCAGACTTTTGCTTTCTGGAATACTGTTGGATACCGGCAATCTTAGCACGG
CGCACTCTAGTACCAAGGATAAGTATATATCTTGCTTGTTGATCAATGGTGCTGGCCAATATGGATTCAATGGTCTTTATCAGATATTGCGACACCAGAA
ATATGATGTGTCAAATCTGAAAGTAATCGATGCTCTGAGGAAAGACTTCAAGAAGTGGTCAAGATCAGCTAAGTCAGATATCATCCGTTTAAAACTAATA
GCTTCAGATATTGGAATGAGTTCTACGGGGATGTCAATGAAGAAACTTCTAACTAATGAGAAGTCCTCAATTGAAGCAATCAAATACTTCCAAGAGCTAG
AGAAACTTGGAGTATTGGTGGTTGTATCTGGGTATTATGATTCGCAAAAGAAGTTCAAGAGGGAGATGCTGATAGTTGGGGAAACCGAGGATGTAACGAA
GAGTATTCTCAAGTTCTTCAATGCAAATGATCATGACTTGCCAATCACACCATTTTATCCCACAGAGCTGAAGGATGAGATGCGTGCAGTTACGATCGAC
AAAATCATTTCTAGACAGACTATCGAGCGTCTGTTGGTTGAATGTTGCGGGGAGTCCTATTCAAGATGCTATTAA
AA sequence
>Lus10008068 pacid=23170720 polypeptide=Lus10008068 locus=Lus10008068.g ID=Lus10008068.BGIv1.0 annot-version=v1.0
MKPADKPISSQPYVRARESSLFNGLLTRSRSPTTDFEQISTSSGSGSRSGSSSGSPPVTSSRFLSDVGNQISTIQSSGKSIPGEEERSDESPPLESDMTG
PDIVLEIQTVRRSSFRHSSDGKQTVSSGFQRSRSVRNDSGYASNPVNKESASSGFSRSASYNVNFDLSGSSDSGCEPKYLTEETATARLPKSHSRQYNLE
TSSTDDSGNEPKLLVKPSKSFAGLPRSRSHNVKVDSSARKDKLTGVLGSRSFSLAGDSSGSVNSGNEAKPLGKTVEAPKEGHAPTIEGSIVKTPGVHPER
LFHLCESKPSPSKVPLPQSAASFYAGFSLQLFQIVESCESMKRVNQYLKARKDEVRAGAPGKFLQAVLGQESSDIGTIASTILYAFYLHETLRNDQFCTV
PVINMKREDLGSRAEISWLLGSCQVDESSLIFVDEIDLHYYDLFGSLKVVLLNGYELPAKQEALKGAVIEVFNCQKAESMYLGVQRVTVSENDSCCTLIA
EKFMQSSLDILAGVAFSRLLLSGILLDTGNLSTAHSSTKDKYISCLLINGAGQYGFNGLYQILRHQKYDVSNLKVIDALRKDFKKWSRSAKSDIIRLKLI
ASDIGMSSTGMSMKKLLTNEKSSIEAIKYFQELEKLGVLVVVSGYYDSQKKFKREMLIVGETEDVTKSILKFFNANDHDLPITPFYPTELKDEMRAVTID
KIISRQTIERLLVECCGESYSRCY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10008068
[exp]
0 1
AT1G60800 NIK3 NSP-interacting kinase 3 (.1) Lus10030591
[exp]
2.0 0.8042
AT5G29000 GARP PHL1 PHR1-like 1, Homeodomain-like ... Lus10032778
[exp]
3.3 0.8046
AT2G47210 MYB myb-like transcription factor ... Lus10021650
[exp]
3.9 0.7686
AT5G22120 unknown protein Lus10004788
[exp]
4.6 0.7734
AT2G07680 ATMRP11, ABCC13 ATP-binding cassette C13, mult... Lus10041661
[exp]
5.7 0.7707
AT5G41130 Esterase/lipase/thioesterase f... Lus10041529
[exp]
6.7 0.7307
AT3G06580 GAL1, GALK GALACTOSE KINASE 1, Mevalonate... Lus10017072
[exp]
9.1 0.7009
AT5G42470 unknown protein Lus10034533
[exp]
10.4 0.7578
AT1G22275 ZYP1b Myosin heavy chain-related pro... Lus10010242
[exp]
16.5 0.7107
AT4G32000 Protein kinase superfamily pro... Lus10001939
[exp]
23.3 0.7301

Lus10008068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.