Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30825 421 / 4e-149 DIS2, ARPC2, ARPC2A DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) AT2G33385 213 / 1e-66 ARPC2B actin-related protein C2B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002867 [exp] 309 / 5e-105 AT1G30825 223 / 1e-71 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) Lus10023737 [exp] 211 / 9e-66 AT2G33385 397 / 1e-137 actin-related protein C2B (.1.2) Lus10011780 [exp] 138 / 2e-37 AT2G33385 228 / 9e-71 actin-related protein C2B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G157700 [exp] 474 / 1e-169 AT1G30825 429 / 5e-152 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) Potri.001G073300 [exp] 468 / 4e-167 AT1G30825 449 / 1e-159 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) Potri.010G067100 [exp] 227 / 6e-72 AT2G33385 410 / 5e-143 actin-related protein C2B (.1.2) Potri.008G170800 [exp] 224 / 2e-70 AT2G33385 410 / 2e-142 actin-related protein C2B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04045 [flax] [poplar] P34-Arc Arp2/3 complex, 34 kD subunit p34-Arc
Representative CDS sequence Show only first row Show all	>Lus10008071 pacid=23170719 polypeptide=Lus10008071 locus=Lus10008071.g ID=Lus10008071.BGIv1.0 annot-version=v1.0 ATGATTCTGTTGCAGTCGCATTCTAGATTTCTCATCGAGACTTTGTATCGGGTTCTAAATCTTCACAAGGCAGTTGAGCTGGATTACAATTGGGTCGAGT TTGGAGATATCCGATACCATGTACAGGTGTCAACGAAGAACCCAAACATTCTGCTTCTGTCTGTCTCGCTGCCTATCCCGCCTCCTGAAACCGTATTCGT TGGTGGACTTCCTTTCGGAGCCATAGAAGCTATAAAATCCTCGTATGGCTCAGTTGTACAGATTCTTGATCCTCCCAGGGATGGCTTCAACCTCACTTTG AAAATCAATTTGGCTAAGCTCCCTACTAATGAAGAGCACAAGCACGCTCTTTTGATGAAGATTGCATCTGTGAGGGAAGTGGTACTAGGTGCTCCACTAA GAGAAGTTCTTAAACATCTTGCTTCAAGGACTGTTGCTCCGGGTATAGATAGGCTTCTGGCACTAGTTCATCGCCCTAACGAGTCCTTTTTCCTTTTGCC CCAGGCTGAAAGGGTCACTGTAGTATATCCTATGAGATTCAGTGACTCTGTTGATACTACATATGCAGCTTCTTTTCTGCAGGAATTTGTGGAAACAAGA CGTACTGCAGGACTTACCAGTGCTCCTGTATGTTCCTGGTCTCCAGACCCTCCCCCAGAACTAAAAGAAACTTCTGTTGAAGCATTATCTGCAAATGCTG GATTTGTATCCTTTGTTATTTACCCACGTCACGTGGAGGGCAGAAAGTTGGATAAGACAGTGTGGAACCTGTCAACGTTTCATGCATATGTTAGTTATCA TGTTAAGTGCACGGAGGCTTTCATGCATACACGGATGCGGAGGCGTGTTGAGGGTATGATAGAGGCCTTAGATCAAGCAAAACCAGTGGCCGAGGATAAA GAAAAATCTCAGAATAACAGCTCTTTTAAAAGGCTGGTAGGTTTTGTTATGGGAGTAAACTTTTAG
AA sequence Show only first row Show all	>Lus10008071 pacid=23170719 polypeptide=Lus10008071 locus=Lus10008071.g ID=Lus10008071.BGIv1.0 annot-version=v1.0 MILLQSHSRFLIETLYRVLNLHKAVELDYNWVEFGDIRYHVQVSTKNPNILLLSVSLPIPPPETVFVGGLPFGAIEAIKSSYGSVVQILDPPRDGFNLTL KINLAKLPTNEEHKHALLMKIASVREVVLGAPLREVLKHLASRTVAPGIDRLLALVHRPNESFFLLPQAERVTVVYPMRFSDSVDTTYAASFLQEFVETR RTAGLTSAPVCSWSPDPPPELKETSVEALSANAGFVSFVIYPRHVEGRKLDKTVWNLSTFHAYVSYHVKCTEAFMHTRMRRRVEGMIEALDQAKPVAEDK EKSQNNSSFKRLVGFVMGVNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Lus10008071 [exp]	0	1
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10031052 [exp]	6.9	0.7985
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10043256 [exp]	14.3	0.7361
AT5G22450			unknown protein		Lus10020607 [exp]	17.5	0.7889
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	19.7	0.8066
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10016768 [exp]	24.4	0.7196
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10028994 [exp]	25.0	0.7589
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10012891 [exp]	26.2	0.7927
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10037915 [exp]	29.0	0.7660
AT4G30310			FGGY family of carbohydrate ki...		Lus10001312 [exp]	29.1	0.7869
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10030543 [exp]	29.2	0.7862

Compare expression of checked genes

Lus10008071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.