Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13440 273 / 4e-93 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64150 50 / 5e-07 RNA methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015342 [exp] 45 / 1e-05 AT5G64150 393 / 2e-136 RNA methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G073700 [exp] 304 / 1e-105 AT3G13440 351 / 8e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G157201 [exp] 147 / 1e-45 AT3G13440 155 / 3e-48 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G221400 [exp] 40 / 0.0007 AT5G64150 413 / 2e-144 RNA methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05175 [flax] [poplar] MTS Methyltransferase small domain
Representative CDS sequence Show only first row Show all	>Lus10008072 pacid=23170721 polypeptide=Lus10008072 locus=Lus10008072.g ID=Lus10008072.BGIv1.0 annot-version=v1.0 ATGGAGTCAAGCACAGCAGAGATCCGGCTGGTGAGTTCTCACCCAGAGGTGTACGAACCCTGCGACGATTCCTTCGCTCTCGTCGACGCCCTCCTCGCTG ACCTAACCAACTTGCTTCACCTTCGTCCCAATATCTGCCTCGAAGTTGGCTGCGGTAGCGGCTACGTCATCACCTCTCTAGCCTTGATGCTACGTCGTGA AGTCCCCGCCGCCTACTTCCTCGCCACCGACATCAACCCTCACGCCGTCAGGGTCACCGGCGAGACGCTGGCGGCGCACGGGTTGGAGGCGGAGTTGGTG CTGTCGGACATCGGGTCTGGGCTGGATAGTCGTCTTGCTGGGAAGGTGGATTTGATGGTGGTGAATCCGCCGTACGTGCCGACGCCTGAAGATGAAGTGG GCCGGGAAGGGATTGCGGCGGCTTGGGCTGGCGGAGAGAACGGGCGGAGGGTTATAGATCGATTGTTGCCCGCAGCGGACAAGCTGTTGTCGAGAAGAGG ATGGTTGTATCTGGTGACTTTGGCGGCGAATGATCCTGCCCAGATATGCGCGGAGATGAGGAGGAAAGGTTATGGTTCTAGGATCATAGTGCAGAGGTCT ACGGAGGAGGAGAGCCTTCATATTATCAAGTTCTGGCGGGAATAG
AA sequence Show only first row Show all	>Lus10008072 pacid=23170721 polypeptide=Lus10008072 locus=Lus10008072.g ID=Lus10008072.BGIv1.0 annot-version=v1.0 MESSTAEIRLVSSHPEVYEPCDDSFALVDALLADLTNLLHLRPNICLEVGCGSGYVITSLALMLRREVPAAYFLATDINPHAVRVTGETLAAHGLEAELV LSDIGSGLDSRLAGKVDLMVVNPPYVPTPEDEVGREGIAAAWAGGENGRRVIDRLLPAADKLLSRRGWLYLVTLAANDPAQICAEMRRKGYGSRIIVQRS TEEESLHIIKFWRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13440			S-adenosyl-L-methionine-depend...		Lus10008072 [exp]	0	1
AT4G35690			Arabidopsis protein of unknown...		Lus10041834 [exp]	15.4	0.6251
AT1G12310			Calcium-binding EF-hand family...		Lus10032205 [exp]	17.9	0.6240
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10015922 [exp]	22.2	0.6401
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10024383 [exp]	22.7	0.6165
AT3G16240		DELTA-TIP1, ATT...	delta tonoplast integral prote...		Lus10038293 [exp]	25.9	0.6377
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10018133 [exp]	27.1	0.5940
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10012624 [exp]	40.7	0.5484
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10013607 [exp]	50.0	0.5984
AT1G22520			Domain of unknown function (DU...		Lus10001541 [exp]	53.4	0.5279
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10021244 [exp]	70.1	0.5734

Compare expression of checked genes

Lus10008072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.