Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44650 202 / 1e-60 Y3IP1, AtCEST Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein AT4G20190 99 / 2e-22 unknown protein AT1G30850 93 / 1e-20 RSH4 root hair specific 4 (.1) AT2G34910 89 / 1e-19 unknown protein AT5G44660 86 / 1e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024729 [exp] 370 / 4e-125 AT5G44650 217 / 3e-69 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein Lus10036246 [exp] 228 / 5e-70 AT4G20190 125 / 3e-33 unknown protein Lus10036245 [exp] 177 / 3e-52 AT5G44650 169 / 4e-52 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein Lus10038386 [exp] 176 / 6e-51 AT4G20190 84 / 2e-18 unknown protein Lus10038385 [exp] 173 / 2e-50 AT5G44650 163 / 2e-49 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G074200 [exp] 226 / 6e-70 AT5G44650 266 / 3e-89 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein Potri.003G156700 [exp] 175 / 2e-49 AT4G20190 129 / 1e-33 unknown protein Potri.001G074300 [exp] 171 / 6e-48 AT4G20190 135 / 4e-36 unknown protein Potri.019G079401 [exp] 42 / 3e-05 AT5G44650 43 / 4e-07 Ycf3-interacting protein 1, Arabidopsis thaliana chloroplast protein-enhancing stress tolerance, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008075 pacid=23170718 polypeptide=Lus10008075 locus=Lus10008075.g ID=Lus10008075.BGIv1.0 annot-version=v1.0 ATGACGACTACAGTGCTCATCCAACTCCCCAGATTTCAGCTTTCTTCACCATCGCCGTTTCTTTCTCCGGCAACCCAGTTCGCCTACTTACGCCGGGCGC CTTCCCTGAACTCGAAATGCTGGAAAGAATCGACCTTCAATGGTGCTTACTGCAGTGGCCTGGGAGGGAGAAAGGCAGGGCTTTTGTGGGTCGGTAGAGA TGATATTGAAATGCCAGTTCAATTAGAAGAATATGACGACGATGATGGTGAAGAGGAAGAAGAAGAAGAAGAGGACGTGTTGGAGCTGCTTAAAAAGAAT AGAGATATGCTTTTCAATGAGGTTAAGCTGACGATAATGATCGAAGACCCAAGAGAAGAGGAGAGAAAGAAGCTATTCGGCATTGACGACCCTGATGCTC CGACCAGAGACGAGCTTGCTGAAGCTCTAGAATTAATTAAGGAAGGCAAGGTTCCAAAAGATCGGCTAGCACTTAGAATGCTAGCAGACGAAATGACGAA TTGGCCTAACTTAGAGGTGGAGGTGTCAAAGAAGGCAAAGCCAACGAAATCGCTATACGCAAGAGTGACAAACACGGGTATAGATCCTAAAGAAGCTGCC AAGAGACTAAAAGTTGACTGGGATTCAGCTGCCGACTTTGAAGATACTGCGGAGGATAGTGATGACTCAGAAGTACCTTCAGCTTTGGGTTATGGAGCTT TGTATTTGGTGACTGGTTTCCCAGTCCTCATCGGTATTTCTGTTCTGCATCATCCATCCAACTATGTATCTAAGTTAAGTGGCATGGCTCTGCTTGCTTC AGAAGAAGAACCCAATTGGTGGAAGGAAAAACAGATTTCTATTGATCCGATTTCGCTGAATTTACCGCCGATTATTGTGGCTCCAAAGATTCAGCCTCCG TCACCACCGCAGGTTAAGCCTCCGCTCATCAGCTTCAGCCTTCATAACTCTCCGCGGTTTGGTTTTTGGCTAACAAAGAAGTTCAAAAACGAGGAAATCA ATAGCATTTCTCGCAGGAAATCGTCCACCGTTCATCCCAATCAGGAAACTCGGTTGCGGAGGACCAAGTCCTGTGCGGAAGGGAGATGGAGCGGAGCAGA TGAACTGGACATATGGTTCAAGAACCAGGAAGACGAATTTGTCCAGCCATCCACAATTGAATCACTTATGGTGGGGAAAGCGGACGAGGATCTCAAAGAA GATGAATTCAAATGTGGCGCACTCTGCCTGTGTCTCCGTGGATTCGGCAGCGGGAAGGGGAAATTGGTGAAGGAGAGGAAGCTAGCGGCAGTGGAAGAAT TGGAAGCAATGACGAAGACTAGAATCTCCAGGACAGTGTCTATGGAGAAATTCGAGTGTGGTTCGTGGGCTTCGTCGTCGGTAATAAATAACTACGACAA GGACGACTGGGATTCCACTCGTTTTTACTACGATCTGCCTCTGGAACTAGTGAAAGGCAATGAGAACGAAGTAAATTCGCCGGTGGCGGCGGCCTTTGTG TTCGACAAGGATTGGATGAAAGGTTCGACGGCCCGGATGGCTGTCCACCGCAAGTCTCAGGAATCATCGGCCAGGTTTTTGTCCTCGTCGAGCCCTTCGT CTCCAGCTCCATGCATTACGCCACGCTTGCGGAAGGCGAGGGAGGAATTCAATGCCTTCCTGAAAGCGGAAGCATGA
AA sequence Show only first row Show all	>Lus10008075 pacid=23170718 polypeptide=Lus10008075 locus=Lus10008075.g ID=Lus10008075.BGIv1.0 annot-version=v1.0 MTTTVLIQLPRFQLSSPSPFLSPATQFAYLRRAPSLNSKCWKESTFNGAYCSGLGGRKAGLLWVGRDDIEMPVQLEEYDDDDGEEEEEEEEDVLELLKKN RDMLFNEVKLTIMIEDPREEERKKLFGIDDPDAPTRDELAEALELIKEGKVPKDRLALRMLADEMTNWPNLEVEVSKKAKPTKSLYARVTNTGIDPKEAA KRLKVDWDSAADFEDTAEDSDDSEVPSALGYGALYLVTGFPVLIGISVLHHPSNYVSKLSGMALLASEEEPNWWKEKQISIDPISLNLPPIIVAPKIQPP SPPQVKPPLISFSLHNSPRFGFWLTKKFKNEEINSISRRKSSTVHPNQETRLRRTKSCAEGRWSGADELDIWFKNQEDEFVQPSTIESLMVGKADEDLKE DEFKCGALCLCLRGFGSGKGKLVKERKLAAVEELEAMTKTRISRTVSMEKFECGSWASSSVINNYDKDDWDSTRFYYDLPLELVKGNENEVNSPVAAAFV FDKDWMKGSTARMAVHRKSQESSARFLSSSSPSSPAPCITPRLRKAREEFNAFLKAEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10008075 [exp]	0	1
AT3G25470			bacterial hemolysin-related (....		Lus10008746 [exp]	4.2	0.9577
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10037822 [exp]	5.2	0.9595
AT1G76760		ATY1, TRX-Y1	thioredoxin Y1 (.1)		Lus10018875 [exp]	5.7	0.9234
AT2G01918		PQL3	PsbQ-like 3 (.1)		Lus10004054 [exp]	7.7	0.9531
AT2G30695			unknown protein		Lus10004790 [exp]	9.5	0.9454
AT4G02725			unknown protein		Lus10014675 [exp]	11.0	0.9500
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10039291 [exp]	12.5	0.9411
AT2G30695			unknown protein		Lus10008364 [exp]	13.0	0.9461
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10025799 [exp]	13.0	0.9487
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10018248 [exp]	14.7	0.8886

Compare expression of checked genes

Lus10008075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.