Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20170 600 / 0 Domain of unknown function (DUF23) (.1) AT5G44670 595 / 0 Domain of unknown function (DUF23) (.1) AT2G33570 457 / 2e-157 Domain of unknown function (DUF23) (.1) AT5G48190 145 / 6e-42 Domain of unknown function (DUF23) (.1) AT3G60990 145 / 6e-42 Domain of unknown function (DUF23) (.1) AT3G07380 142 / 6e-41 Domain of unknown function (DUF23) (.1) AT4G37420 45 / 0.0001 Domain of unknown function (DUF23) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038387 [exp] 791 / 0 AT5G44670 639 / 0.0 Domain of unknown function (DUF23) (.1) Lus10036247 [exp] 785 / 0 AT5G44670 649 / 0.0 Domain of unknown function (DUF23) (.1) Lus10024731 [exp] 702 / 0 AT5G44670 491 / 1e-170 Domain of unknown function (DUF23) (.1) Lus10036676 [exp] 43 / 0.0006 AT1G27200 543 / 0.0 Domain of unknown function (DUF23) (.1) Lus10010731 [exp] 43 / 0.0006 AT1G27200 555 / 0.0 Domain of unknown function (DUF23) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G074600 [exp] 731 / 0 AT5G44670 613 / 0.0 Domain of unknown function (DUF23) (.1) Potri.003G156600 [exp] 723 / 0 AT5G44670 598 / 0.0 Domain of unknown function (DUF23) (.1) Potri.005G258900 [exp] 442 / 1e-151 AT2G33570 706 / 0.0 Domain of unknown function (DUF23) (.1) Potri.010G039000 [exp] 44 / 0.0002 AT1G27200 582 / 0.0 Domain of unknown function (DUF23) (.1) Potri.008G192000 [exp] 44 / 0.0003 AT1G27200 585 / 0.0 Domain of unknown function (DUF23) (.1) Potri.005G252100 [exp] 44 / 0.0004 AT4G37420 540 / 0.0 Domain of unknown function (DUF23) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01697 [flax] [poplar] Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence Show only first row Show all	>Lus10008076 pacid=23170725 polypeptide=Lus10008076 locus=Lus10008076.g ID=Lus10008076.BGIv1.0 annot-version=v1.0 ATGGGTGTTGTACTTAACTGCGCCCCTGAGCTTAAGCTTATCCTCACCGCTCTCCTCATCCTCTGCTCCCTCGTCACCCTCCTCCAATTCCTCCCTTCCC GTTTCACCATTTCCACCTCCGATCTCCGCTTCTGTATCTCCCGAATCACAACCACCACCACCACTACCACTACCACCACTGAACCTGTCGCCATCTTTCC TCTCAACTCCACCTCCTCCTCCGCCGCTCTTACCACTTCGCATCTGGTCGTTCCGCCGCCGCCCCTCCCTTCTTCTGCCGTCGACAAGGAGAAGATACTA GACAACGGAGTAATCAAGCGCATTTTCAATCCTTATGGCTCCGCCGCTTACAGTTTCATCACTATGGGGACTTACAGAGGCGGCCTCAACACCTTCGCCA TTAACGGTCTTGCTTCTAAACCTCTCCACCTCTACTCCAAGCCCACTTACCAATGCGAGTGGCTTCCTGATTCATCTTCCAATTCCTCCTCTGCTCCGAA GCCGGTAACCACCGTCGGGTACAAGATGCTGCCCGATTGGGGCTACGGACGGGTCTACACCGTCGTAATAATAAACTGTACTTTCTCACAGCCAATCAAC ACTGACAACTCCGGAGGCAAGCTGTACCTTATCGCCTACAGTTCCGGCGGCGGGGACACCAAATTCAACACCACCGACCGCTTCGAGATACTGGACGAGC CCAAGGGGAGCGTCGATTTCGCGGTTTTTAAATCGAAGCCGAAATACGATTACCTCTACTGCGGGTCTTCTCTGTACGGGCAGCTCAGCCCGCAGAGGGT AAGGGAGTGGATTGCATACCACGTCCGGCTGTTTGGGGAGAGATCTCATTTCGTGATTCACGACGCCGGCGGTGTCTACGACGAGGTGTACGAGGTGCTG AAGCCATGGATGGATCTCGGGTATGTGACGCTGCAAGACATCAGGGACCAAGAGAGATTCGACGGTTACTATCACAATCAGTTCATGGTGGTGAACGATT GCCTTCACCGCTACAAGTTCATGGCCAAATGGATGTTTTTCTTTGATGTGGACGAGTTCATTTATGTTCCCCCAAAGAGCACCATCAAATCAGTGCTGGA TTCCCTTTCCGACTATTCACAGTTCACCATTGAACAGATGCCCATGAACAGCAAGCTCTGTCTAAACGCCGACTACGGCAGATATTACAGGAGATGGGGG TTGGAGAAGCTAGTGTACAAGGACGCGAAGACAGGGATAAGGAGGGACCGGAAGTATGCGATCCAGCCGCGGAATGTGTACGCTACGGGAGTACATATGT CGCAGAACTTGGGAGGGAAAACAACCCACAAGACGGAAGGGAGGATAAAGTACTACCATTACCATGGGTCGATAGCGCAGAGGAGGGAGCCTTGCCGGAA ATTGCTCAATGTGACAAAGACTACCTTCGAAAAGACTCCTTATGTGCTGGACACCACAATGAGGGACATTGCATGGGCTGTCAAGAAATTTGAGAACCGA ATGATTGGAACCAGGCTACAGAACACCCGTCAATGA
AA sequence Show only first row Show all	>Lus10008076 pacid=23170725 polypeptide=Lus10008076 locus=Lus10008076.g ID=Lus10008076.BGIv1.0 annot-version=v1.0 MGVVLNCAPELKLILTALLILCSLVTLLQFLPSRFTISTSDLRFCISRITTTTTTTTTTTEPVAIFPLNSTSSSAALTTSHLVVPPPPLPSSAVDKEKIL DNGVIKRIFNPYGSAAYSFITMGTYRGGLNTFAINGLASKPLHLYSKPTYQCEWLPDSSSNSSSAPKPVTTVGYKMLPDWGYGRVYTVVIINCTFSQPIN TDNSGGKLYLIAYSSGGGDTKFNTTDRFEILDEPKGSVDFAVFKSKPKYDYLYCGSSLYGQLSPQRVREWIAYHVRLFGERSHFVIHDAGGVYDEVYEVL KPWMDLGYVTLQDIRDQERFDGYYHNQFMVVNDCLHRYKFMAKWMFFFDVDEFIYVPPKSTIKSVLDSLSDYSQFTIEQMPMNSKLCLNADYGRYYRRWG LEKLVYKDAKTGIRRDRKYAIQPRNVYATGVHMSQNLGGKTTHKTEGRIKYYHYHGSIAQRREPCRKLLNVTKTTFEKTPYVLDTTMRDIAWAVKKFENR MIGTRLQNTRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44670			Domain of unknown function (DU...		Lus10008076 [exp]	0	1
AT5G44670			Domain of unknown function (DU...		Lus10024731 [exp]	1.4	0.8857
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10018848 [exp]	1.7	0.9103
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10015833 [exp]	2.0	0.8705
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10009134 [exp]	2.4	0.8721
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016123 [exp]	3.2	0.8671
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10022428 [exp]	5.8	0.8197
AT1G32860			Glycosyl hydrolase superfamily...		Lus10017344 [exp]	6.0	0.8608
AT3G53950			glyoxal oxidase-related protei...		Lus10024342 [exp]	6.3	0.8478
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10025395 [exp]	7.9	0.8483
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10004807 [exp]	9.2	0.8333

Compare expression of checked genes

Lus10008076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.