Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20060 362 / 4e-128 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G52700 351 / 2e-123 alpha/beta-Hydrolases superfamily protein (.1) AT3G15650 347 / 9e-122 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G52695 159 / 3e-48 alpha/beta-Hydrolases superfamily protein (.1) AT1G52460 125 / 4e-35 alpha/beta-Hydrolases superfamily protein (.1) AT1G47786 123 / 9e-35 alpha/beta-Hydrolases superfamily protein (.1) AT1G51300 122 / 3e-34 alpha/beta-Hydrolases superfamily protein (.1) AT1G52470 118 / 2e-32 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G47780 94 / 3e-24 alpha/beta-Hydrolases superfamily protein (.1) AT1G52440 94 / 3e-23 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019438 [exp] 368 / 6e-130 AT5G20060 387 / 1e-137 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10043294 [exp] 364 / 7e-128 AT5G20060 385 / 3e-136 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10002034 [exp] 346 / 5e-120 AT3G15650 239 / 1e-77 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10026054 [exp] 327 / 1e-113 AT1G52700 337 / 2e-117 alpha/beta-Hydrolases superfamily protein (.1) Lus10014347 [exp] 323 / 4e-112 AT1G52700 328 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G251100 [exp] 440 / 1e-158 AT5G20060 370 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.018G030200 [exp] 439 / 3e-158 AT5G20060 373 / 4e-132 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.001G173700 [exp] 394 / 2e-140 AT3G15650 389 / 7e-138 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G060300 [exp] 380 / 4e-135 AT1G52700 382 / 1e-135 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G070700 [exp] 376 / 2e-133 AT5G20060 398 / 8e-142 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.011G023000 [exp] 85 / 2e-19 AT4G22300 357 / 1e-125 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02230 [flax] [poplar] Abhydrolase_2 Phospholipase/Carboxylesterase
Representative CDS sequence Show only first row Show all	>Lus10008078 pacid=23169768 polypeptide=Lus10008078 locus=Lus10008078.g ID=Lus10008078.BGIv1.0 annot-version=v1.0 ATGAGAACTTCATCAAGATCACTCGAGTTTGGAAGGACTTACGTCGTTAGGCCGAAAGGGAAGCATCAGGCCACATTGGTTTGGCTTCATGGCTTAGGTG ACAAGGGATCAAGTTGGGCACAGATCTTGGAGACTCTTCCTCTTCCAAATATTAAATGGATTTGCCCCACTGCTCCAACCAGGCCAGTTGCAATATTTGG TGGATTTCCATGCACTGCGTGGTTTGATGTTGGGGAAATTTCAGAAGACAGTCCTGATGACGTAGAGGGGTTAGATGCTTCAGCTGCACATGTCGCCAAT CTGTTATCGACCGAGCCTGCTGATATCAAAGTTGGTGTTGGTGGCTTCAGCATGGGTGCTGCAACTGCCCTTTACTCTGCTACTTGCCAGATATTAGGGC AGTATGGGAATGGGAACCCGTACCAGGTCAACCTAAGTGCTGTAGTTGGTCTTAGCGGCTGGCTTCCTTGTTCAAGGACTCTGAAAACCCGGATGGAAAG ATCGTACGACGCTGTAAGGCATGCAGCGTCTCTGCCCATTTTGCTCTGTCATGGATCAGGCGACGACGTGGTGGCTCACAAGCACGGAGAGAAATCAGCA CGGACATTAAGCTCAGTCGGGTTCCAAAATCTCGGATTCAGAACCTACAATGGAATGGGTCACTATACCATCCCAGAAGAGACTAGTGAAGTCTGCACTT GGCTTACCACAAAACTGGGACTGGAGGGATCTTGA
AA sequence Show only first row Show all	>Lus10008078 pacid=23169768 polypeptide=Lus10008078 locus=Lus10008078.g ID=Lus10008078.BGIv1.0 annot-version=v1.0 MRTSSRSLEFGRTYVVRPKGKHQATLVWLHGLGDKGSSWAQILETLPLPNIKWICPTAPTRPVAIFGGFPCTAWFDVGEISEDSPDDVEGLDASAAHVAN LLSTEPADIKVGVGGFSMGAATALYSATCQILGQYGNGNPYQVNLSAVVGLSGWLPCSRTLKTRMERSYDAVRHAASLPILLCHGSGDDVVAHKHGEKSA RTLSSVGFQNLGFRTYNGMGHYTIPEETSEVCTWLTTKLGLEGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10008078 [exp]	0	1
					Lus10008409 [exp]	4.1	0.9089
AT5G58850	MYB	ATMYB119	myb domain protein 119 (.1)		Lus10018220 [exp]	7.2	0.8952
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10020785 [exp]	9.4	0.8910
AT1G75980			Single hybrid motif superfamil...		Lus10017287 [exp]	11.2	0.8768
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10025821 [exp]	12.6	0.8907
					Lus10017800 [exp]	14.1	0.8649
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10023100 [exp]	14.7	0.8944
AT5G39160			RmlC-like cupins superfamily p...		Lus10034254 [exp]	15.6	0.8834
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10024260 [exp]	16.4	0.8834
AT1G16290			unknown protein		Lus10037104 [exp]	16.7	0.8220

Compare expression of checked genes

Lus10008078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.