Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32420 225 / 5e-62 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3.4) AT3G63400 186 / 1e-51 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT4G38740 154 / 6e-43 ROC1 rotamase CYP 1 (.1) AT2G21130 153 / 9e-43 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G34870 152 / 1e-42 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT2G15790 154 / 6e-41 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT2G29960 146 / 8e-40 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT3G56070 144 / 2e-39 ROC2 rotamase cyclophilin 2 (.1.2) AT3G55920 145 / 4e-39 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G16600 141 / 1e-38 ROC3 rotamase CYP 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013111 [exp] 352 / 1e-108 AT3G63400 288 / 5e-85 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10024831 [exp] 181 / 6e-48 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10018746 [exp] 178 / 7e-47 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10022012 [exp] 156 / 8e-44 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10042553 [exp] 155 / 2e-43 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2) Lus10020992 [exp] 160 / 8e-43 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10018238 [exp] 153 / 3e-42 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 153 / 3e-42 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10023860 [exp] 155 / 3e-41 AT2G15790 599 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G030300 [exp] 259 / 3e-74 AT4G32420 284 / 3e-83 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3.4) Potri.006G250900 [exp] 258 / 9e-74 AT4G32420 283 / 5e-83 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3.4) Potri.002G047200 [exp] 191 / 6e-51 AT3G63400 229 / 1e-66 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.005G215800 [exp] 182 / 4e-48 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.004G144300 [exp] 164 / 2e-44 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.009G106200 [exp] 156 / 1e-41 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.009G130100 [exp] 150 / 1e-41 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G135500 [exp] 155 / 2e-41 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.007G040100 [exp] 155 / 4e-41 AT2G15790 551 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.004G168800 [exp] 148 / 6e-41 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10008079 pacid=23169733 polypeptide=Lus10008079 locus=Lus10008079.g ID=Lus10008079.BGIv1.0 annot-version=v1.0 ATGAAGAATCCAGTGGTTTTTATGGATGTATCTATTGATGGAGATCCATCAGAGAGAATGGTTTTTGAGCTTTTCAATGATGTCGTTCCAAAGACTGCAG AAAATTTCCGTGCTCTTTGCACAGGTACTGTAAGCAAAGAATATGGATTATTTCAATTGTGTTCTTCAGGTAGTGGGGATGGAGAGGGCGGGTTTAGGGT TTTGGAGGTTCTTGGAGAAAAAGGAATTGGGCCAAAAACTGGAAAACCTTTGCACTTCAAGGGCTCGTTCTTCCATCGTGTCATTAAAGGCTCTATGGTT CAGGGAGGCGACTTCTCTAAGAGAGATGGCACTGATGGAGAGAGCATATATGGTGATAAGTTTCCCGATGAGTCTCCAAGACTAAAGCATGATGAGCCAG GTCTTCTGTCCATGCCAACCGCTGTTCGTGATACCGTAGGGTCTCAGTTCATTATCACTTTTGGGGTTAATCATAGCCTGGACAGGAAGTACGTAGTGTT TGGGAAGCTTGTCAAAGGATTAAATGTTCTCAAGAAAATTGAAGGTGTAGGAGATGAAGAAGGGAAGCCAACAGTGATAGTGAAAATAATCAATTGTGGT GAACTTGATGATAAGAAGCAATTGAAACATAAGGCAGGAACGGATGTATCACCTAATGCTAGTACCTTGGAAACAAAGAAGAAAGGGAAACACAAAAGAT CTTCAAGGAACAAGAAGAAAAAGAGAAGAAGACACCATTCATCGGATTCTGATAGTTCATCTGATTCTGAGTTGGACTCCTCTGAGTCTGACAGTGATAC CGACTCAGATTTATCATCATCTGAACTTAGCTCTTCCAGTGATGATAAACGGAAGAAGAGGAAAAGATTGTCGAAAAGAGACAGATATAGACGTGGGAAA AGAAGAGATAAACGTCGTGAAAGAAGGCGGAAAAGATATGACAAGAAGTCTAAACATAGATCAAGAAGGGATTCGGATAGTCTTTCAGAAGATTCCAGCA CTAGCAGGACTGATAGTTCCTCTGGTGATGACAGCTTTGATATGCAAGCAAAAGAGCAAAAGCGTAAAGACCGAGGACATAAAACTGGTGCAGATCCCTC TTCTGTTGTATCTGAAAGAGAGGCTGCTGAATCTTCACTTGTTCGAAAGAGGAATCCCGATACCATGGAGGAAAATGGCGAATCTCTCAACCAAAATGGA GTGAGGCAGGGCAAAGGTGCTGATTTGGATATGACATCCGATAGAAGCAGGGACCGGCAACCTGATGTGGTGGATGATCACCCCGGAAAATCTAGGAGCC GGAGCATGAGTATCAGTCCAAGAAAAACTCTTAGCAGCAGGAGTCCCAGCATTAGTCCAAACAAGAGCTTGAGCAGGAGCCCCAGTGTTAGCCGAAGCCT CCCACCAAGGAGTCCCAGGAGAAGTCCGGCGAGAAGTGTCAGACGCAGCCCGGTGAGGGGAAGAAGTGTGAAGAGTATTAGCAACAGCCCTGCTAGAAGT GTGAGCAGGAGTCCATCAGTAAGAAGAAATGCTAGAAGCATTAGCAAGAGCCCAGCTAGGAGCCTGAGCAGGAGTATCAGTAAGAGCCCGGCTAGGAGCA TCAGTAGGAGCCCAGTCAGAAGCACAAAAGCTAGAAGCATAACCAAAAGCCCTGTACGATCTCGTTCAAGAAAAAGTGTTAGCAGAAGCCCGGTTAGGCC ACGCTCTCGAAGAAATATCAGCAGGAGCCCGGTGAGATCTCGGTCTCGAAGAAGCAACAGCCAAAGCCCCGCGAGAGGCCTTGCTCGGAGAAGCTTGAGC AGGAAGTCTGTAAGTAGAAGCCCTGTTAGATCTACTAGGAGAAGTATGAGCAGAAGCTCTGGAGAGGGGCCTCCCTCTAGGAGGAGCATTAGCAGAAGTC CTGTGAAGGCACCGATCAGGAGTCGTCGTCGGAGTTCCTCAAGGAGCCATAGCCCTGTAAGGAGGAGGAACAGATCTCCTGATCGTAGAAGTTCGTCGAG AAGTTTGTCTCCAGATGGATCTCCTAAGCGCATTAGGAGAGGGCGGGGCTTCAGTCAGAGGTACTCTTATGCTCGACGGTACAGAACCCCTTCTCCGGAT CGCTCTCCTGTGAGGTCTTATCGTTACGGTGGAAGAAACGATCGTGACAGGTATTCCGGTTATAGGAGGTACTCACCAAGGCGTTTCAGAAGCCCTCCAA GAGGAAGAACTCCTCCAAGATTTAGAGGCAGGAGAAGCAGAACAAGAAGTCCTTCTGTGACAAGGAGGAGCCCTCGGTACAGAAGCCGTAGGTACAGCAG GAGTCGAAGCCCCATTCGTAACCTGAGTCGTTCTCCAATTGATTCAAGGTCTCGGACATCTCCACGCGCCACGAAGCTAAGGTCGCCTTCAATGAGCCCT AGCCCAAGCCGCAGTCGCAGCCAGAGCCCTGCAGATTCGAGATCTTCGCTTGGTTCGCAGTCTCCGAAAAAGGAACGATCAAGGTCGTCATCGGGAAGCC CGAGTGGGAAGAAGGGCTTGGTTTCTTACGACGATGCTTCTCCTTAG
AA sequence Show only first row Show all	>Lus10008079 pacid=23169733 polypeptide=Lus10008079 locus=Lus10008079.g ID=Lus10008079.BGIv1.0 annot-version=v1.0 MKNPVVFMDVSIDGDPSERMVFELFNDVVPKTAENFRALCTGTVSKEYGLFQLCSSGSGDGEGGFRVLEVLGEKGIGPKTGKPLHFKGSFFHRVIKGSMV QGGDFSKRDGTDGESIYGDKFPDESPRLKHDEPGLLSMPTAVRDTVGSQFIITFGVNHSLDRKYVVFGKLVKGLNVLKKIEGVGDEEGKPTVIVKIINCG ELDDKKQLKHKAGTDVSPNASTLETKKKGKHKRSSRNKKKKRRRHHSSDSDSSSDSELDSSESDSDTDSDLSSSELSSSSDDKRKKRKRLSKRDRYRRGK RRDKRRERRRKRYDKKSKHRSRRDSDSLSEDSSTSRTDSSSGDDSFDMQAKEQKRKDRGHKTGADPSSVVSEREAAESSLVRKRNPDTMEENGESLNQNG VRQGKGADLDMTSDRSRDRQPDVVDDHPGKSRSRSMSISPRKTLSSRSPSISPNKSLSRSPSVSRSLPPRSPRRSPARSVRRSPVRGRSVKSISNSPARS VSRSPSVRRNARSISKSPARSLSRSISKSPARSISRSPVRSTKARSITKSPVRSRSRKSVSRSPVRPRSRRNISRSPVRSRSRRSNSQSPARGLARRSLS RKSVSRSPVRSTRRSMSRSSGEGPPSRRSISRSPVKAPIRSRRRSSSRSHSPVRRRNRSPDRRSSSRSLSPDGSPKRIRRGRGFSQRYSYARRYRTPSPD RSPVRSYRYGGRNDRDRYSGYRRYSPRRFRSPPRGRTPPRFRGRRSRTRSPSVTRRSPRYRSRRYSRSRSPIRNLSRSPIDSRSRTSPRATKLRSPSMSP SPSRSRSQSPADSRSSLGSQSPKKERSRSSSGSPSGKKGLVSYDDASP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32420			Cyclophilin-like peptidyl-prol...		Lus10008079 [exp]	0	1
AT3G62200			Putative endonuclease or glyco...		Lus10009982 [exp]	3.9	0.8864
AT5G46920			Intron maturase, type II famil...		Lus10003020 [exp]	4.6	0.8930
AT1G26370		RID1	RNA helicase family protein (....		Lus10036917 [exp]	6.0	0.8690
AT1G30010			Intron maturase, type II famil...		Lus10028124 [exp]	8.1	0.8834
AT1G18950			DDT domain superfamily (.1)		Lus10004259 [exp]	8.6	0.8894
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10020585 [exp]	15.7	0.8802
AT2G05760			Xanthine/uracil permease famil...		Lus10035311 [exp]	16.6	0.8698
AT2G28150			Domain of unknown function (DU...		Lus10021417 [exp]	18.4	0.8544
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10005530 [exp]	18.5	0.8706
AT5G46070			Guanylate-binding family prote...		Lus10013965 [exp]	18.9	0.8602

Compare expression of checked genes

Lus10008079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.