Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11420 597 / 0 Protein of unknown function, DUF642 (.1) AT5G25460 595 / 0 Protein of unknown function, DUF642 (.1) AT4G32460 583 / 0 Protein of unknown function, DUF642 (.1.2) AT1G80240 484 / 3e-172 Protein of unknown function, DUF642 (.1) AT3G08030 416 / 3e-145 Protein of unknown function, DUF642 (.1.2) AT2G41800 397 / 6e-138 Protein of unknown function, DUF642 (.1) AT2G41810 395 / 6e-137 Protein of unknown function, DUF642 (.1) AT2G34510 351 / 2e-119 Protein of unknown function, DUF642 (.1) AT1G29980 351 / 4e-119 Protein of unknown function, DUF642 (.1.2) AT5G14150 144 / 2e-39 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013112 [exp] 735 / 0 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10005474 [exp] 642 / 0 AT5G11420 581 / 0.0 Protein of unknown function, DUF642 (.1) Lus10025753 [exp] 443 / 1e-155 AT5G11420 453 / 8e-160 Protein of unknown function, DUF642 (.1) Lus10035910 [exp] 440 / 6e-154 AT5G11420 452 / 9e-159 Protein of unknown function, DUF642 (.1) Lus10029501 [exp] 436 / 8e-153 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 434 / 5e-152 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10016394 [exp] 395 / 1e-136 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2) Lus10016393 [exp] 392 / 1e-135 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 390 / 8e-135 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250100 [exp] 611 / 0 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 606 / 0 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 525 / 0 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 510 / 0 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G263900 [exp] 425 / 7e-149 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.009G058800 [exp] 420 / 5e-147 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.006G050300 [exp] 413 / 4e-144 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 408 / 4e-142 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 397 / 1e-137 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 360 / 8e-123 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10008080 pacid=23169783 polypeptide=Lus10008080 locus=Lus10008080.g ID=Lus10008080.BGIv1.0 annot-version=v1.0 ATGGGAGAAAGCAGAGTTGGGTTTAAAACGACGGCGGCGTTCGCGGTGGCGCTGCTGCTTCTCGCCACTTGTCACTCCGGCTCCGCCATCAGAGACGGGC TGCTAAGGAATGGCAACTTCGAGCTGGGACCGAAGGCGACATCAATGAAGGGCACGCAAGTAACTGGCCGGCTATCCCTCCCCGAGTGGGAGATCTCGGG GTTCGTCGAGTACATCAAGTCGGGCCAGAAGCAAGGCGACATGCTGCTGGTGGTCCCCGAGGGCGCGTTTGCTGTGCGCCTGGGGAACGAGGCGTCGATC AAGCAGCGCGTGAAGGTGATAAAGGGAATGTACTATTCCCTCACCTTCAGCGCGGCCCGGACCTGCGCCCAGGAGGAGAAGCTCAACATCTCTGTGTCGC CTGATTCAGGGGTGCTGCCGATGCAGACCATGTACAGTAGCAACGGGTGGGATTCGTACGCGTGGGCATTCCAGGCTGAGTATGGATATGCTGAGATTGT GATTCATAATCCTGGTGTTGAGGAGGACCCTGCTTGTGGACCGTTGATTGACTCTGTTGCTATTAGGGCTTTGTTCCCTCCTAGACCCACCAATAAGAAT ATATTGAAGAACGGAGGGTGGGAAGAAGGCCCGTACATCCTCCCAAACACGTCATGGGGAGTCCTGATCCCGCCGAACATCGAAGACGACCACTCCCCAC TCCCCGGCTGGATGGTTGAGTCTCTCAAGGCCGTCAAATACATCGACTCCGACCACTTCTCCGTTCCCCAAGGCCGCCGCGCCATTGAGCTCGTCGCCGG CAAGGAGAGCGCCATTGCCCAGGTGGCCCGCACCGTCCCTGGAAAAACCTACACCCTCACCTTCGCCGTCGGCGACGCCAGCAACGCCTGCGCCGGTTCC ATGCTGGTGGAGGCCTTCGCCGGTAAAGACACGCTCAAGGTCCCCTACACCTCCGGCGGGAAGGGCGGGTTCAAAAGGGCGGAGCTCCGGTTCGTCGCCA CGTCGGCTCGGACACGTGTCATGTTCTACAGCTCGTTCTATCATATGAGGAGCGACGACTTCTCTTCGCTGTGTGGGCCCGTCGTTGACGACGTCAAGCT TCTGAGCGTCCGTAAACCTACGCGCCGCGTGTAG
AA sequence Show only first row Show all	>Lus10008080 pacid=23169783 polypeptide=Lus10008080 locus=Lus10008080.g ID=Lus10008080.BGIv1.0 annot-version=v1.0 MGESRVGFKTTAAFAVALLLLATCHSGSAIRDGLLRNGNFELGPKATSMKGTQVTGRLSLPEWEISGFVEYIKSGQKQGDMLLVVPEGAFAVRLGNEASI KQRVKVIKGMYYSLTFSAARTCAQEEKLNISVSPDSGVLPMQTMYSSNGWDSYAWAFQAEYGYAEIVIHNPGVEEDPACGPLIDSVAIRALFPPRPTNKN ILKNGGWEEGPYILPNTSWGVLIPPNIEDDHSPLPGWMVESLKAVKYIDSDHFSVPQGRRAIELVAGKESAIAQVARTVPGKTYTLTFAVGDASNACAGS MLVEAFAGKDTLKVPYTSGGKGGFKRAELRFVATSARTRVMFYSSFYHMRSDDFSSLCGPVVDDVKLLSVRKPTRRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11420			Protein of unknown function, D...		Lus10008080 [exp]	0	1
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015242 [exp]	1.7	0.9072
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031824 [exp]	3.0	0.8593
AT5G25390	AP2_ERF	SHN3, SHN2	shine3, Integrase-type DNA-bin...		Lus10002912 [exp]	4.0	0.8881
AT1G79720			Eukaryotic aspartyl protease f...		Lus10041621 [exp]	5.5	0.8225
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034614 [exp]	8.1	0.8651
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003107 [exp]	10.1	0.8847
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10026281 [exp]	11.5	0.8596
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10004771 [exp]	12.2	0.8845
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10026769 [exp]	12.7	0.8110
AT5G11420			Protein of unknown function, D...		Lus10013112 [exp]	14.5	0.8081

Compare expression of checked genes

Lus10008080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.