Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25450 164 / 3e-53 Cytochrome bd ubiquinol oxidase, 14kDa subunit (.1.2) AT4G32470 161 / 3e-52 Cytochrome bd ubiquinol oxidase, 14kDa subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013113 [exp] 184 / 3e-61 AT5G25450 169 / 6e-56 Cytochrome bd ubiquinol oxidase, 14kDa subunit (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G031400 [exp] 176 / 4e-58 AT5G25450 173 / 2e-57 Cytochrome bd ubiquinol oxidase, 14kDa subunit (.1.2) Potri.006G250000 [exp] 175 / 1e-57 AT5G25450 172 / 7e-57 Cytochrome bd ubiquinol oxidase, 14kDa subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02271 [flax] [poplar] UCR_14kD Ubiquinol-cytochrome C reductase complex 14kD subunit
Representative CDS sequence Show only first row Show all	>Lus10008081 pacid=23169769 polypeptide=Lus10008081 locus=Lus10008081.g ID=Lus10008081.BGIv1.0 annot-version=v1.0 ATGTCTACCTTCTTGCAATCGTTTCTAGATCCAAGGAAGAACTGGTTCGCCAAGCAGCACATGAAAACCATCTCCGGCCGTCTCCGTAAATACGGTCTTA GGTACGACGATCTCTACGATCCATACTTTGATTTGGATGTGAAGGAGGCGCTCAATCGGCTTCCTAGAGAGATCGTGGACGCTCGTAACCAGCGCCTCAA ACGGGCCATGGATCTCTCCATGAAGCACGAGTACCTCTCTAAGGAACTCCAGGCAATGCAAACACCATTCAGGAGTTACCTCAAGGATATGCTGGCACTA GTAAGTGATGTAGAGAAATATGATCTGTTGTCTGGATTGTTAGTGTTGCTGGTGAAAAAGGAGAATGCAGAGCGTGAGGCTTTGGGAGCATTGCCTCTCT ATCAGAGGACATTCCCTTAA
AA sequence Show only first row Show all	>Lus10008081 pacid=23169769 polypeptide=Lus10008081 locus=Lus10008081.g ID=Lus10008081.BGIv1.0 annot-version=v1.0 MSTFLQSFLDPRKNWFAKQHMKTISGRLRKYGLRYDDLYDPYFDLDVKEALNRLPREIVDARNQRLKRAMDLSMKHEYLSKELQAMQTPFRSYLKDMLAL VSDVEKYDLLSGLLVLLVKKENAEREALGALPLYQRTFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10008081 [exp]	0	1
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10013113 [exp]	1.0	0.9601
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030871 [exp]	1.4	0.9142
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10004213 [exp]	1.7	0.8837
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021852 [exp]	3.2	0.8698
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10031084 [exp]	3.2	0.8401
AT4G14380			unknown protein		Lus10011818 [exp]	4.6	0.8506
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10025319 [exp]	4.9	0.8500
AT1G13750			Purple acid phosphatases super...		Lus10036904 [exp]	6.0	0.8496
AT1G67570			Protein of unknown function (D...		Lus10043011 [exp]	6.5	0.8569
AT5G14360			Ubiquitin-like superfamily pro...		Lus10022315 [exp]	7.1	0.8160

Compare expression of checked genes

Lus10008081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.