Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25600 967 / 0 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT2G26650 943 / 0 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT4G32500 938 / 0 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT4G22200 548 / 0 AKT3, AKT2/3 potassium transport 2/3 (.1) AT4G18290 531 / 4e-179 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT5G46240 528 / 6e-178 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G32650 413 / 1e-134 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT5G37500 370 / 2e-115 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT3G02850 367 / 3e-114 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT2G23980 77 / 2e-14 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013115 [exp] 1576 / 0 AT2G25600 1036 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10002529 [exp] 1132 / 0 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10043298 [exp] 973 / 0 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019442 [exp] 972 / 0 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 949 / 0 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10042831 [exp] 556 / 0 AT5G46240 825 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10019944 [exp] 555 / 0 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10028128 [exp] 548 / 0 AT5G46240 827 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10015474 [exp] 545 / 0 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G031600 [exp] 1081 / 0 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.006G249900 [exp] 1069 / 0 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G071400 [exp] 957 / 0 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.006G154600 [exp] 674 / 0 AT2G26650 816 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.003G018800 [exp] 565 / 0 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.004G132200 [exp] 563 / 0 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.006G245000 [exp] 451 / 4e-149 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 432 / 2e-141 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 414 / 8e-135 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.017G135400 [exp] 359 / 2e-111 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10008082 pacid=23169736 polypeptide=Lus10008082 locus=Lus10008082.g ID=Lus10008082.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAAAACAGGAAGAACAAGGTCATGTTCTCCGGCGACCACGACGGCAGCGGACGATCTGGGGAAATGGCGCTCAACGAGAAGGAGATAGACT GTTACTCGGCTGACGACGGAAGCCATTTCAGCCTTACCGGCGACATCCTCCCTTCTCTCGGCGCCACACGCAGCACCCGCCGCGCTAGGCTCCGCCGCTT CATCGTCTCCCCCTTCGATTCTCGCTACAGGAGTTGGGAGGTGTTCCTTGTGTTTCTGGTTTTCTACACGGCCTGGATGTCGCCGTTCGAATTCGGATTC GTGGCGCGTCCGAGCGGGGCACTTGCGATCACCGATAACGTAGTGAATGCTTTCTTCTTCGTCGACATTGTGTTGACGTTCTTCGTCGCTTACCTCGACG AGAACACGTTCCTTCTTGTGGATTCCAAGCAGGAGATTGCTCTGAGGTACATCAAGAGCTGGTTCTTCCTCGATCTCATCTCCACAATCCCCACCGACGT TGTTCGTGCTATATTGCCTGATAGTCTTCAAGCATATGGTTACGTCAGTATGCTGCGCCTTTGGCGTATCCGACGAGTTAGTCAACTCTGCTCCAGATTG GAGAAAGATAAGAACTACAGCTATTTCTGGATTCGTTGCGCCAGGCTCATTTGTGTTACTCTTTTTGTTCTTCACCTGGCTGCCTGCTTCTTTTACCGTC TGGCTGCAAATTACTCTGATCCCAAGCAAACATGGATTGGATCGGTTCGGGAGAAATTTAAAGGGGATCCGTTGTCAGTTAGTTATGTGCAAGCCATGTA CTGGTCTATAACAACGTTTAGTACCACTGGATATGGTGATTTACATGCTGTAAATCCCGGCGAAATGGCGTTTGTAGTGGTATATATGGTGTTTAATCTC GGATTGTCTTCCTACTTGATTGGAAATATGACCAATTTGGTCGTCCATGGAGCTGCTCGGACCAGGCATTTCAGGGATACGATTCAAGCTGCCTCAAGTT TTTCACAGAGAAATCATCTTCCTGTTCGGTTGGAAGATCAGATGATTGCTCATTTGAGTTTGAAGTACAGAACTAATTCCGAGGGACTACATCAGCAAGA GGCCATTGATTCCCTCCCTAAAGCCATTCGATCTAGTATTGCAAACTACCTATTTTACCCACTAATAGATAGGGTGTATTTATTTCGAGGAATTCCACAT GACTTGCTTTTCCAATTGGTCTCAGAAATGAAGCCTGAGTACTTTCCTCCAAGAGAAGATGTGATCTTGCAGAATGAAGCTCCCACGGATATGTATTTTC TGGTCTCTGGGGCTGTGGTTGTTGATGAGGCAAGGACTGGTGACGTTGTTGGTGAGATTGGTGTTATATGTTACAGACCACAAATGTTCACAGTTCGAAC CAAAAGACTCAGTCAGCTTCTGCGTTTGAACCGAACTGCGTTTTTTAACCTCCTTCAAGCTAATGTTTCGGATGGGACTATAATCATGAACAATGTTCTT CAGCATTTGAAGGAAAGGAACGATCCACTGATGCAAGAAATCTTATCAGAGACAGAGCACATGCTTGCACAGGGGAAAACAGATTTGCCTCTTACTTTAT GTTTCGCAGCCACGAGAGGTGATGATCTATTGTTACAACACATACTCAAGCGTGGTTCGGACCCCAACGAGGCAGATGATGGCGGCCGTACTGCAATGCA TATTGCCGCTTCAAATGGGAATGAACGCTGCGTAGCTTTACTTCTGGAATATGGAGCTGACCCCAATAGAAAAGATTCCGAAGGCCATGTTCCGTTATGG GACGCACTCCTCGCCAATCACCAAAACGTGGTCAAGCTACTCTCCGACAACGGCTCTACATTATCCTCAGCCGACGTCGGCCAGTTTGCACTGAGAGCAG TCGAACAAAACGACCTGAACTTACTAAAGGAAATCGTTCAGTACGGAGGAGAAGTAACGACAACAAGCAAAGGCACCACAGCGCTCCACTCGGCAGTAGC TCAAGCAAACACCGGAATGGTTAAGTTTTTGTTGGACCAAGGATCCGACGTGGAAATACCGGATGCCAACGGGTGGACGGCGAGGGCGTTGGCGGATCAT CAAGGCCATGAAGAGATCAAGCTTTTGATCCAGAATAGGAAAGAGGTGAAGAAACCGGCAAAGGTGGAAACTTTTCAGGGGGTTAGAGCGGGAAGTGCCG TTGGGAAGAAGGGGCTGAAAAAGTACGGAAGTCAACCTTTGTCGGCGCGGACGGTGTCTGAACGGAGAAGATTCAATAATTTCAGTAATTCGCTGTTCGG GATGATGTCGGCTGCCAATTCAGGTGAGAGCGACATCCCAGCATCTGGCGGCGGTGGTGGCTTGCTGAGCTTCAGTAGCCCTCCGGACAGAGTAACCGTA AGTTGTCCGGAGAGAGGCGATGTTACAGGGAAGATGATGGTGCTGCCGAAGTCGCTCTGA
AA sequence Show only first row Show all	>Lus10008082 pacid=23169736 polypeptide=Lus10008082 locus=Lus10008082.g ID=Lus10008082.BGIv1.0 annot-version=v1.0 MGKKNRKNKVMFSGDHDGSGRSGEMALNEKEIDCYSADDGSHFSLTGDILPSLGATRSTRRARLRRFIVSPFDSRYRSWEVFLVFLVFYTAWMSPFEFGF VARPSGALAITDNVVNAFFFVDIVLTFFVAYLDENTFLLVDSKQEIALRYIKSWFFLDLISTIPTDVVRAILPDSLQAYGYVSMLRLWRIRRVSQLCSRL EKDKNYSYFWIRCARLICVTLFVLHLAACFFYRLAANYSDPKQTWIGSVREKFKGDPLSVSYVQAMYWSITTFSTTGYGDLHAVNPGEMAFVVVYMVFNL GLSSYLIGNMTNLVVHGAARTRHFRDTIQAASSFSQRNHLPVRLEDQMIAHLSLKYRTNSEGLHQQEAIDSLPKAIRSSIANYLFYPLIDRVYLFRGIPH DLLFQLVSEMKPEYFPPREDVILQNEAPTDMYFLVSGAVVVDEARTGDVVGEIGVICYRPQMFTVRTKRLSQLLRLNRTAFFNLLQANVSDGTIIMNNVL QHLKERNDPLMQEILSETEHMLAQGKTDLPLTLCFAATRGDDLLLQHILKRGSDPNEADDGGRTAMHIAASNGNERCVALLLEYGADPNRKDSEGHVPLW DALLANHQNVVKLLSDNGSTLSSADVGQFALRAVEQNDLNLLKEIVQYGGEVTTTSKGTTALHSAVAQANTGMVKFLLDQGSDVEIPDANGWTARALADH QGHEEIKLLIQNRKEVKKPAKVETFQGVRAGSAVGKKGLKKYGSQPLSARTVSERRRFNNFSNSLFGMMSAANSGESDIPASGGGGGLLSFSSPPDRVTV SCPERGDVTGKMMVLPKSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Lus10008082 [exp]	0	1
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10013723 [exp]	2.0	0.8827
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10014952 [exp]	3.5	0.8142
AT3G28460			methyltransferases (.1)		Lus10005835 [exp]	5.1	0.8563
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10022689 [exp]	5.7	0.7934
AT2G26270			unknown protein		Lus10009795 [exp]	6.6	0.7822
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026787 [exp]	7.4	0.8162
AT5G67620			unknown protein		Lus10011549 [exp]	8.2	0.7928
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10016745 [exp]	11.0	0.8171
AT5G40270			HD domain-containing metal-dep...		Lus10022228 [exp]	11.5	0.8021
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Lus10013115 [exp]	12.0	0.8124

Compare expression of checked genes

Lus10008082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.