Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11380 917 / 0 DXPS3 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) AT4G15560 713 / 0 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) AT3G21500 589 / 0 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT5G50850 62 / 4e-10 MAB1 MACCI-BOU, Transketolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013117 [exp] 1375 / 0 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Lus10012789 [exp] 699 / 0 AT4G15560 1229 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10002663 [exp] 688 / 0 AT4G15560 1026 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10012724 [exp] 686 / 0 AT4G15560 1030 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10001322 [exp] 682 / 0 AT4G15560 1021 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10015517 [exp] 681 / 0 AT4G15560 1020 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10019991 [exp] 681 / 0 AT4G15560 1018 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10006984 [exp] 679 / 0 AT4G15560 1023 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10033987 [exp] 646 / 0 AT4G15560 1134 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G249700 [exp] 1051 / 0 AT5G11380 949 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.018G031800 [exp] 1045 / 0 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.010G015200 [exp] 710 / 0 AT4G15560 1227 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.008G196500 [exp] 707 / 0 AT4G15560 1207 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G171700 [exp] 681 / 0 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.007G058500 [exp] 679 / 0 AT4G15560 999 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.001G061400 [exp] 69 / 4e-12 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.003G166400 [exp] 67 / 1e-11 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.004G129800 [exp] 47 / 5e-05 AT2G34590 634 / 0.0 Transketolase family protein (.1) Potri.017G076500 [exp] 44 / 0.0002 AT2G34590 671 / 0.0 Transketolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [flax] [poplar] TKC_like PF02780 [flax] [poplar] Transketolase_C Transketolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008084 pacid=23169787 polypeptide=Lus10008084 locus=Lus10008084.g ID=Lus10008084.BGIv1.0 annot-version=v1.0 ATGGGTACTGCAATTGCTCAGTACCCAAATGGAATCGCGTCGCATTCCGGTGGGAAATCCGCTCTGAAGTTGGGTTCCAGATGTTGTTCCTTCTCCAAGC TCCCTTGTCGGTTGGATAATAATAAAGTCTCTAGCTTTGGCGGCCTTCATCATCAAGGGGGCTCTGCTTCTTCCAGTAACTCCAAGGGATTCGCTACTCG GTTCTATGCTGTACCAGATATAGACGATATGTTTTGGGACAAAGTATCGACTCCGATTCTTGATATGGTTGAGAACCCTATTCACCTCAAGAATTTGACC CTCAAGGAACTGAAAGAACTGGCTCAAGAAATGAGGTCAGAATTGTCTTCTCTAATGTCACAGCGGCCGAATTCTTTGAAGGCCAGTTTGGCTGTGGTGG AACTTACCATTGCCATGCACCATGTTTTTCATGCTCCAGTGGACAAGATACTTTGGGATGCCGGAGAACAAACCTATGCGCATAAACTACTCACAGGAAG GAGGTCACTGATGCAAAAGCTGAAACAAAAGAACGGCCTTTCTGGATTTACATCTCGTTCCGAGAGTGAATATGATTCGTTTGGAACAGGGCATGGGTGC AATAGTGTTTCTGCTGGTCTCGGAATGGCGATTGCACGTGATATCAAAGGGAAGCGAGATCGCGTCGTGACTGTCATCAGCAATGCCACAACTCTGGCTG GTCAAGCCTATGAAGCAATGAGTAATGCTGGCTACTTGGACTCGAATATGATTGTGATTTTGAATGATAGCCGTCGATCTTTACATCCGAAGATCGAACA AGGACCGAAAACTTCAATCACTGCCTTGTCTAGTACTTTAAGCAAGATCCAGTCTAGTAAATCGTTCCGGAAGTTCAGAGAAGTTGCAAAGGGGCTAACG AAAAGGATCGGTAAGGGTATGTATGAACTGGCTGCCAAAGTAGATGAATACGCCCGTGGTATGGTTGGTCCGCAAGGATCGACTCTTTTCGAAGAGCTTG GCATGTATTATATCGGCCCTGTCGATGGTCACAACATAGAAGACCTGATTTGTGTTCTGCAAGAAGTCGGGTCTCTCGACTCCATGGGGCCCGTCTTGAT ACATGTGATCACAGAAGACAATCATCAAGCAGAATGTAACGAACAGACCGAGGCAGAGAACCTGCAGGGAGGTTATGGATCGATTTCTTCCCCGTCTAAT GTTCACACTCGAACGTACAGCGATTGCTTTGTAGATTCTTTGCTTCTAGAGACGGAGAAACACAAAGATATCGTGATTGTTCATGCCGGAATCGCAATGG AACCCGCTTTTCACTTGCTTCAGGAAACCTTCGGCGACAAGTTTTTCGACGTCGGTATGGCTGAGCAACATGCTGTTACATTCTCCGCCGGTTTATCTTG TGGCGGATTAAGGCCGTTTTGCATCATTCCTTCTACTTTTCTGCAGAGAGCCTATGATCAGATCGTCCACGATGTGGATCGGCAGAAGATCCCGGTCCGC TTTGTGATTACAAGTGCAGGATTGGTGGGGAATTCCGGTCCCATGTATAACGGTGCATTTGATGTTACATTCATGTCGTGCTTGCCTAACATGATCGTAA TGGCTCCTTCGGATGAGGATGAGTTGGTCGACATGGTGGCTACCGCAGCCCAGATCGACAATCGCCCGGTTTGCTTCCGCTATCCGAGAGGCGCCATCGT CAGAACAGACCATTTCATGCGTTCCGGGATTCCCCTTAAGATTGGCAAAGGAAGAGTTCTCATGGAAGGTAAAGACGTGGCATTGCTCGGGTACGGAGCC ATGGTCCAGAACTGTCTCAAAGCTCAAGCCCTTCTGTCGAAGCTTGGAATCGAAGTAACCGTTGCAGATGCAAGATTCTGCAAGCCACTCGATACAGAGC TTCTCAGCCTGTTATGTGAAAACCATCAGTTCCTGATAACTGTCGAGGAAGGATCCATCGGAGGGTTCGCTTCCCACGTGGCACAGTTCATAGCTCTCAA CGGCCATCTCGATGCATCCATCAAGTGGCGGCCGATTGTTTTACCAGACAGCTACGTCGAAAACGCATTGCCTGAAGAACAGCTAGCTCGAGCCGGGTTG AGTGGGAACCATATAGCTGCAACCGTGCTGAGATTGCTAGGAAGAGCGCGGGAAGCTGTCCTGTTGATGTGCTAA
AA sequence Show only first row Show all	>Lus10008084 pacid=23169787 polypeptide=Lus10008084 locus=Lus10008084.g ID=Lus10008084.BGIv1.0 annot-version=v1.0 MGTAIAQYPNGIASHSGGKSALKLGSRCCSFSKLPCRLDNNKVSSFGGLHHQGGSASSSNSKGFATRFYAVPDIDDMFWDKVSTPILDMVENPIHLKNLT LKELKELAQEMRSELSSLMSQRPNSLKASLAVVELTIAMHHVFHAPVDKILWDAGEQTYAHKLLTGRRSLMQKLKQKNGLSGFTSRSESEYDSFGTGHGC NSVSAGLGMAIARDIKGKRDRVVTVISNATTLAGQAYEAMSNAGYLDSNMIVILNDSRRSLHPKIEQGPKTSITALSSTLSKIQSSKSFRKFREVAKGLT KRIGKGMYELAAKVDEYARGMVGPQGSTLFEELGMYYIGPVDGHNIEDLICVLQEVGSLDSMGPVLIHVITEDNHQAECNEQTEAENLQGGYGSISSPSN VHTRTYSDCFVDSLLLETEKHKDIVIVHAGIAMEPAFHLLQETFGDKFFDVGMAEQHAVTFSAGLSCGGLRPFCIIPSTFLQRAYDQIVHDVDRQKIPVR FVITSAGLVGNSGPMYNGAFDVTFMSCLPNMIVMAPSDEDELVDMVATAAQIDNRPVCFRYPRGAIVRTDHFMRSGIPLKIGKGRVLMEGKDVALLGYGA MVQNCLKAQALLSKLGIEVTVADARFCKPLDTELLSLLCENHQFLITVEEGSIGGFASHVAQFIALNGHLDASIKWRPIVLPDSYVENALPEEQLARAGL SGNHIAATVLRLLGRAREAVLLMC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Lus10008084 [exp]	0	1
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Lus10004525 [exp]	2.8	0.8884
AT5G59960			unknown protein		Lus10004947 [exp]	5.3	0.9095
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10004509 [exp]	6.7	0.8539
AT5G11380		DXPS3	1-deoxy-D-xylulose 5-phosphate...		Lus10013117 [exp]	8.7	0.8997
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10039769 [exp]	10.6	0.8908
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10019837 [exp]	12.1	0.9108
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10018541 [exp]	17.4	0.8976
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10019506 [exp]	22.9	0.8630
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10020086 [exp]	23.0	0.8348
AT2G30600			BTB/POZ domain-containing prot...		Lus10012262 [exp]	27.3	0.8880

Compare expression of checked genes

Lus10008084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.