Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11350 512 / 3e-172 DNAse I-like superfamily protein (.1) AT3G18500 219 / 7e-64 DNAse I-like superfamily protein (.1.2.3) AT1G73875 204 / 4e-58 DNAse I-like superfamily protein (.1) AT3G58580 103 / 6e-23 DNAse I-like superfamily protein (.1) AT3G58560 100 / 1e-21 DNAse I-like superfamily protein (.1) AT1G31500 95 / 9e-21 DNAse I-like superfamily protein (.1.2.3.4) AT1G02270 66 / 5e-11 Calcium-binding endonuclease/exonuclease/phosphatase family (.1) AT5G54130 58 / 1e-08 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013119 [exp] 1183 / 0 AT5G11350 536 / 0.0 DNAse I-like superfamily protein (.1) Lus10032490 [exp] 208 / 1e-59 AT1G73875 446 / 3e-154 DNAse I-like superfamily protein (.1) Lus10014775 [exp] 201 / 4e-57 AT3G18500 423 / 7e-146 DNAse I-like superfamily protein (.1.2.3) Lus10036357 [exp] 195 / 6e-55 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10015981 [exp] 106 / 1e-23 AT3G58580 872 / 0.0 DNAse I-like superfamily protein (.1) Lus10012293 [exp] 106 / 1e-23 AT3G58560 949 / 0.0 DNAse I-like superfamily protein (.1) Lus10016206 [exp] 103 / 6e-23 AT3G58560 944 / 0.0 DNAse I-like superfamily protein (.1) Lus10029338 [exp] 102 / 1e-22 AT3G58560 945 / 0.0 DNAse I-like superfamily protein (.1) Lus10026203 [exp] 100 / 2e-22 AT1G31500 458 / 2e-162 DNAse I-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G032300 [exp] 404 / 3e-130 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1) Potri.012G057100 [exp] 203 / 8e-58 AT1G73875 502 / 2e-176 DNAse I-like superfamily protein (.1) Potri.006G195600 [exp] 101 / 4e-22 AT3G58560 904 / 0.0 DNAse I-like superfamily protein (.1) Potri.016G061700 [exp] 101 / 4e-22 AT3G58560 926 / 0.0 DNAse I-like superfamily protein (.1) Potri.003G106000 [exp] 99 / 6e-22 AT1G31500 457 / 1e-160 DNAse I-like superfamily protein (.1.2.3.4) Potri.012G007600 [exp] 60 / 3e-09 AT5G54130 721 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.015G004200 [exp] 59 / 5e-09 AT5G54130 719 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.014G108200 [exp] 57 / 2e-08 AT5G54130 620 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.002G182500 [exp] 54 / 3e-07 AT5G54130 600 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10008086 pacid=23169770 polypeptide=Lus10008086 locus=Lus10008086.g ID=Lus10008086.BGIv1.0 annot-version=v1.0 ATGTCTTCTCGCATCCCACAACGCGGCGGTGGTAGAAGGCCTTGGGGAAGAGGAGGCTTCTCCGGCCGCCATTACAGTGGCGGGAGAGTCCCACCACAGT TCTTTCCCGGCGACTCACAGCTCCCGCCTCCTCACCACCAGGACGCCGATTTAGGGTTCACACAAGGACGGCAAGGCAGTTCCAATCCATGGCGGCCGCC GGAGTTCCAGCAGCCGCGTCCACACTATTACCAGAATCAGCATCAGTTCCGACAGCCACCGCCGTTTGTTCAGAATCAGCACCTTCAGCAGTTCCAGCAG GCTCCGGCGTTTGATCGTCATCATGGTTTCCGACCACCGCATCGGCCTATTCAGCAGCTACCGAAAGAATTGATTTTTAGGAATTGGGAGTATGCCAGTG TTCATCCTTCTCCTAATGCAGAAAGGTTTAGCGTCCTTTCTTATAATATACTCGCCGACTATCTGGCGATCAACCACAGGAGCAAACTTTACTTTCACAT ACCTCATCATATGCTGTCTTGGCAATGGAGGAAGAGAAGCATAATCTTTGAACTTGGCTTGTGGAAAGCTGATATACTATGCTTTCAGGAGCTTGACAGA TTTCAGGAGTTGGAAGAAGACTTGAAGCCATCAGGATACAGTGGCATTTATCAGATGCGGACAGGCACTGCCACTGATGGATGTGCCATCTTTTGGAGAA CTTCAAAATTCAACTTGGTTCATGAAGAATCTATCGTGTTCAATAATTTTGGACTCCGAGATAACGTTGCTCAGATATGTGTGCTGGAGGTAGATGACAG TCTTTTAGAGAACTTTGTATCTTCTAAAACTGGTTCTAATAAAGTTGTCGTATGCAACATTCATGTGCTGTACAATCCTAGGAGAGGTGAAATTAAGATT GGTCAGGTGAGAAAACTTCTCGATAGGGCCCATGCTGCTTCAAAACTGTGGAATGATGCTCCAGTTGTTCTCTGTGGTGACTTTAATTGCACCCCAAAGA GTCCATTGTACAACTTCATCTCTGAACAGAAGTTAGATTTGTTAGAAGTAGATAGAGATAAGGTATCCGGACAGGCTTCTGCTGAAATACGACATCCAAG GATGAACTACCCTGGTTCAAAACCCAATCCTAATTCTTTCGCTCAGTCTCATTTGCCCAATAATCCAGGTCAAGTTCAGTTTACAGTCGATAGCAAGCTA GATACTCAGTCTGCAGATCTCCTGAAAAATTATCATCAAACTGCGATGGGAGAAGGCAATCCTTCGAGTAATGATGCAATTTCTGGTAGCATACCGGATT CAAGTGGTCCTTCATCAGAATGGGATTCTGGTTCTAATAGGATGACGTTTCAAAGTTCTGAATCAAGTATTTCCATAGGAGATACGTGCAGGAACTTCAA GGATCTATCCATCTCACACGAAGTATCTTGTTCTGGGAGCAGAGGATTTCATTCTTCACGGACAGATATCAATACTGAAAACCTCGGTTCTTCTGAACAT GAAGTTTTAAGTGGTGAAGATGAAAGCAGTTTCTTAGATGCACTACACGGAACAAATGATACTTTCTCTCAAACTGCAAGCTCGGATATGGATCAATCCA GGAAAGAATTCGGCATGAGTCCAAATGGCTCTCAAGTGGCCTTGCTAACAGATGAAATCACTAATGATTCTTCCCAGAGCCAGGACTTTGAGGTTGTCGA CGAGAATAATATATACGATCCATCAGTTTGGACGCCGATGGAAATAGCTACTGCTACAGGAGATGCAGAATGCGTCCATTTACAGCATCCTCTAACTCTT AGAAGTGCTTATGCAACGGTTGAGGTAAACTTCACGTTTGTTGTTCTGGACCGTTCAGGGACGAGAGATTCCCACGGAGAGCCGGAGGCGACGAGCTATA ACAGGCATTTCTTGGGCACGGTTGACTATATCTGGTTTTCGAAAGGCCTCCAGGCTGTCGGTGTACTTGCTCCTATACCGAAACGTGCCATGCAGTGGAC TTCCGGGTTCCCAACCAAGAAATGGGGGAGTGACCATATTGCGTTGGCATCTGAGTTCGCCTTTGCTCCGATCGAGGCAAACCCAGAAGTGGATCATCAT CCATCCCATGAACAAGAACCATTCAGGAACGAAGCATGA
AA sequence Show only first row Show all	>Lus10008086 pacid=23169770 polypeptide=Lus10008086 locus=Lus10008086.g ID=Lus10008086.BGIv1.0 annot-version=v1.0 MSSRIPQRGGGRRPWGRGGFSGRHYSGGRVPPQFFPGDSQLPPPHHQDADLGFTQGRQGSSNPWRPPEFQQPRPHYYQNQHQFRQPPPFVQNQHLQQFQQ APAFDRHHGFRPPHRPIQQLPKELIFRNWEYASVHPSPNAERFSVLSYNILADYLAINHRSKLYFHIPHHMLSWQWRKRSIIFELGLWKADILCFQELDR FQELEEDLKPSGYSGIYQMRTGTATDGCAIFWRTSKFNLVHEESIVFNNFGLRDNVAQICVLEVDDSLLENFVSSKTGSNKVVVCNIHVLYNPRRGEIKI GQVRKLLDRAHAASKLWNDAPVVLCGDFNCTPKSPLYNFISEQKLDLLEVDRDKVSGQASAEIRHPRMNYPGSKPNPNSFAQSHLPNNPGQVQFTVDSKL DTQSADLLKNYHQTAMGEGNPSSNDAISGSIPDSSGPSSEWDSGSNRMTFQSSESSISIGDTCRNFKDLSISHEVSCSGSRGFHSSRTDINTENLGSSEH EVLSGEDESSFLDALHGTNDTFSQTASSDMDQSRKEFGMSPNGSQVALLTDEITNDSSQSQDFEVVDENNIYDPSVWTPMEIATATGDAECVHLQHPLTL RSAYATVEVNFTFVVLDRSGTRDSHGEPEATSYNRHFLGTVDYIWFSKGLQAVGVLAPIPKRAMQWTSGFPTKKWGSDHIALASEFAFAPIEANPEVDHH PSHEQEPFRNEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11350			DNAse I-like superfamily prote...		Lus10008086 [exp]	0	1
AT1G50575			Putative lysine decarboxylase ...		Lus10016588 [exp]	12.4	0.8155
AT2G39890		ATPROT1, ProT1	proline transporter 1 (.1.2)		Lus10009877 [exp]	13.0	0.8115
AT1G76405			unknown protein		Lus10016039 [exp]	21.6	0.8254
AT3G47570			Leucine-rich repeat protein ki...		Lus10037840 [exp]	22.4	0.7653
AT1G04390			BTB/POZ domain-containing prot...		Lus10002546 [exp]	25.4	0.8420
AT2G25570			binding (.1.2.3)		Lus10001073 [exp]	26.6	0.7717
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10042890 [exp]	29.5	0.8422
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Lus10004118 [exp]	32.0	0.8183
AT1G26520			Cobalamin biosynthesis CobW-li...		Lus10004653 [exp]	35.3	0.8163
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10022904 [exp]	37.5	0.8339

Compare expression of checked genes

Lus10008086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.