Plant FIBer expression Database

Lus10008087 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25605 292 / 9e-102 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G249000
[exp]
313 / 6e-110 AT2G25605 314 / 1e-110 unknown protein
PFAM info
Representative CDS sequence
>Lus10008087 pacid=23169767 polypeptide=Lus10008087 locus=Lus10008087.g ID=Lus10008087.BGIv1.0 annot-version=v1.0
ATGATGATGTCATCCCTGCCTCCATCTTCATGGCCCGCGCCACTGCAGCTACCCAAGTCCAAGCCTTTCAGCTGCGATTACCGGCCGATCAACTGTCGCA
GCGGCGTCAGGGCTTCCGCCGGAGTTCCCGATTTCTTCTCCGCCGATTGGCTGGAATCTCGGCGGAATCGACCCGATGGGCCGAGACTGAACTTTAGTGC
AGAAGAAGCTGTCGAGTACCAACTTGATGCTTTAAAGCACAACGACCAACCTCGCCAAGACTATGGAATCGAGGTTATGTACAGGTTTGCAGGATTCGAT
CCTTTCGAAAGATCGACCTATTTCGGACCCTTCTTTGATCTCGGCCAGTTTGAGAGGTTCAGGAGAATTTTCCACCATTCAACTTACAGAGTGTTGCTTG
GTCATAAAGAGAGGAAGATACTGAGCAGCTTGTTAGTCGAAGAGAACCAGTTCAAGCAGCGGGTATGGGTGAGAGGGAATCGTCCAGAAGAGGAAGAGAT
ATTCCAGTTCACCATGGTTCAGAGAGTTGGGGGATTGCTGGATGGATATTGGCTGACAGAGTCAGTGTTGCATGATGGAGATGCTTTTGCTGGTGGATTG
GCATATTGA
AA sequence
>Lus10008087 pacid=23169767 polypeptide=Lus10008087 locus=Lus10008087.g ID=Lus10008087.BGIv1.0 annot-version=v1.0
MMMSSLPPSSWPAPLQLPKSKPFSCDYRPINCRSGVRASAGVPDFFSADWLESRRNRPDGPRLNFSAEEAVEYQLDALKHNDQPRQDYGIEVMYRFAGFD
PFERSTYFGPFFDLGQFERFRRIFHHSTYRVLLGHKERKILSSLLVEENQFKQRVWVRGNRPEEEEIFQFTMVQRVGGLLDGYWLTESVLHDGDAFAGGL
AY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G25605 unknown protein Lus10008087
[exp]
0 1
AT4G08500 ARAKIN, ATMEKK1... MAPK/ERK kinase kinase 1 (.1) Lus10003745
[exp]
1.4 0.8412
AT1G09880 Rhamnogalacturonate lyase fami... Lus10030232
[exp]
6.7 0.8271
AT5G23090 CCAAT NF-YB13 "nuclear factor Y, subunit B13... Lus10009614
[exp]
7.1 0.7990
AT5G52580 RabGAP/TBC domain-containing p... Lus10006646
[exp]
9.5 0.8026
AT5G06130 chaperone protein dnaJ-related... Lus10022688
[exp]
12.1 0.8096
AT5G53350 CLPX CLP protease regulatory subuni... Lus10037222
[exp]
16.7 0.8075
AT4G14290 alpha/beta-Hydrolases superfam... Lus10034017
[exp]
16.7 0.8348
AT1G27840 ATCSA-1 Transducin/WD40 repeat-like su... Lus10007742
[exp]
22.1 0.8151
AT3G22142 Bifunctional inhibitor/lipid-t... Lus10033214
[exp]
23.1 0.7632
AT4G00330 CRCK2 calmodulin-binding receptor-li... Lus10017787
[exp]
24.4 0.7916

Lus10008087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.