Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11340 249 / 4e-85 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT5G16800 60 / 6e-11 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) AT2G38130 52 / 4e-08 ATMAK3 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT3G02980 48 / 9e-07 MCC1 MEIOTIC CONTROL OF CROSSOVERS1 (.1) AT1G03650 44 / 1e-05 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT5G13780 42 / 0.0001 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013120 [exp] 305 / 3e-107 AT5G11340 256 / 8e-89 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10013457 [exp] 59 / 2e-10 AT5G16800 337 / 1e-117 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10041016 [exp] 57 / 1e-09 AT5G16800 334 / 1e-116 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10041514 [exp] 56 / 2e-09 AT2G38130 287 / 3e-100 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10012579 [exp] 54 / 7e-09 AT2G38130 286 / 7e-100 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10025567 [exp] 45 / 7e-06 AT1G03650 233 / 8e-80 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10021559 [exp] 41 / 0.0004 AT2G06025 244 / 2e-80 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G032400 [exp] 268 / 1e-92 AT5G11340 270 / 4e-94 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.006G248900 [exp] 261 / 6e-90 AT5G11340 280 / 3e-98 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.001G432400 [exp] 60 / 4e-11 AT2G38130 296 / 4e-104 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G435300 [exp] 60 / 5e-11 AT2G38130 299 / 6e-105 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.001G429200 [exp] 60 / 5e-11 AT2G38130 299 / 6e-105 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.011G139300 [exp] 60 / 6e-11 AT2G38130 294 / 1e-102 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.019G050700 [exp] 60 / 6e-11 AT5G16800 334 / 2e-116 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.013G079900 [exp] 60 / 1e-10 AT5G16800 346 / 3e-121 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.013G134102 [exp] 49 / 2e-07 AT1G03650 242 / 2e-83 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.013G134000 [exp] 49 / 2e-07 AT1G03650 240 / 2e-82 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10008088 pacid=23169756 polypeptide=Lus10008088 locus=Lus10008088.g ID=Lus10008088.BGIv1.0 annot-version=v1.0 ATGGGGATTGGTAGTAAGCAAGTCTCCATATCTTTGGATGGAGTGCGGGAGAAGAATATGATGCAGCTCAAGAAGCTCAATACTGTCCTCTTCCCCGTCC GTTACAACGACAAGTACTACTCCGACGCCCTCGCTTCTTCCGACTTCACCAAACTCGGTACCGATTCTCATTCCTTCTTCGGGATTTGGGTTGGTGTTAG TTTTAGGATCCTTAAGTTGCCTTTACAAATTCTCAAGCTACATTTGTCTCACACCGTTGCTTCTTGCTCAGCTTATTACAGCGACATCTGCGTCGGAGCC ATTGCATGCCGCCTGGAGAAGAAGGAAGGCGGGGCTGTCTGTGTTTACATCATGACTCTGGGCGTGCTAGCACCTTATCGCGGCCTAGGCATTGGGACGA GACTGTTGAACCACGTCCTGGATCTCTGCCAGAAGCAGAACAACATCCCTGAGATATACTTGCACGTGCAGACGAACAACGAAGATGCCATCAACTTCTA CAAGAAGTTCGGGTTCGAGATTGCAGACACCATCCAGAATTACTACACCAACATAACGCCACCAGATTGCTACGTTGTTAAGAAATTATTTACTCAGACT GAGAAATGCCATGGTTCAAGCTAG
AA sequence Show only first row Show all	>Lus10008088 pacid=23169756 polypeptide=Lus10008088 locus=Lus10008088.g ID=Lus10008088.BGIv1.0 annot-version=v1.0 MGIGSKQVSISLDGVREKNMMQLKKLNTVLFPVRYNDKYYSDALASSDFTKLGTDSHSFFGIWVGVSFRILKLPLQILKLHLSHTVASCSAYYSDICVGA IACRLEKKEGGAVCVYIMTLGVLAPYRGLGIGTRLLNHVLDLCQKQNNIPEIYLHVQTNNEDAINFYKKFGFEIADTIQNYYTNITPPDCYVVKKLFTQT EKCHGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10008088 [exp]	0	1
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10013120 [exp]	1.0	0.8775
AT2G39170			unknown protein		Lus10040608 [exp]	3.7	0.8220
AT3G26360			Ribosomal protein S21 family p...		Lus10006466 [exp]	6.7	0.7593
AT1G31817		NFD3	NUCLEAR FUSION DEFECTIVE 3, Ri...		Lus10012155 [exp]	11.3	0.7601
AT1G80230			Rubredoxin-like superfamily pr...		Lus10025745 [exp]	12.2	0.7341
AT2G37120			S1FA-like DNA-binding protein ...		Lus10015073 [exp]	13.0	0.7417
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	14.5	0.7484
AT3G27100			unknown protein		Lus10012534 [exp]	14.6	0.7704
AT1G15940			Tudor/PWWP/MBT superfamily pro...		Lus10009948 [exp]	18.0	0.7404
AT4G38370			Phosphoglycerate mutase family...		Lus10023935 [exp]	18.4	0.7373

Compare expression of checked genes

Lus10008088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.