Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11330 441 / 2e-154 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G67030 47 / 1e-05 NPQ2, LOS6, IBS3, ATZEP, ATABA1, ABA1 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013121 [exp] 400 / 2e-139 AT5G11330 369 / 1e-127 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Lus10013122 [exp] 153 / 5e-46 AT5G11330 87 / 6e-22 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Lus10009359 [exp] 48 / 1e-05 AT5G67030 888 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Lus10000593 [exp] 44 / 0.0002 AT2G35660 639 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2), FAD/NAD(P)-binding oxidoreductase family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G032500 [exp] 482 / 3e-170 AT5G11330 568 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Potri.006G248800 [exp] 398 / 6e-138 AT5G11330 427 / 4e-149 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Potri.007G044300 [exp] 51 / 1e-06 AT5G67030 919 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Potri.001G229100 [exp] 49 / 4e-06 AT5G67030 477 / 9e-164 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Potri.005G138400 [exp] 49 / 5e-06 AT5G67030 925 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Potri.019G003700 [exp] 43 / 0.0002 AT4G38540 256 / 9e-82 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003300 [exp] 43 / 0.0003 AT5G05320 272 / 1e-87 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G003500 [exp] 43 / 0.0003 AT5G05320 273 / 4e-88 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01266 [flax] [poplar] DAO FAD dependent oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10008089 pacid=23169760 polypeptide=Lus10008089 locus=Lus10008089.g ID=Lus10008089.BGIv1.0 annot-version=v1.0 ATGGCGCCGAAGGCAATCATTGTTGGCGGGAGCATCGCCGGAATATGCTGCGCCCACTCCCTCCTCCTCGCCGGCTGGCAAGTTACCGTCATCGAGAAAT CCTCTTCTCCCCCAACTGAAAGCTCCACCGGCGCTGGCCTCTGCCTCGACCCCCCAACCCTCCACTTTCCCTCTATCCATCGACCAGAGACCAAATCCAG GCGGGTGCTGACCAGAGACGAACAGTTCGAGTTTAGAGCCGCTCACTGGGCCGATCTTCACCGCCTCCTCTACACTTCTTTACCGCCGGATAATTCCGCT TCGTTTCTATGGGGCCATCTTTACCAATCCTTCTCCGTTTCGAAAAAGGACAACAAATCATCCGTCTCCGTTAAATCCAAAGTCCTCCAAACTGGGGAAA TCGTCGAGATAACTGGAGATCTGCTCGTAGCTGCAGATGGATGTCTATCCGCCGTTCGCCGGACTTTCCTTCCTGATCTGGGTTTGAGGTATTCAGGCTA CTGTGCGTGGAGAGGGGTGCTTGATTTCTCTGGAAAGGAAGATTCAGACACCATTTCAGACATGCGAAGAGCATATCCTGATCTGGGTAAGTGTTTGTAT TTTGATCTAAGCAGTGAAGGAACTCACAGTGTGTTCTATGAACTTCTCAACAGTCGGCTTAACTGGATTTGGTACGTCCATCACCCCAACCCTGAGCTCA AGGGGAGTAGTAGCACTTCAGTGACCATGAAAGTAAGCAGGGAGATGACTGAAGACATGTACAAGAAAGCAGAGAAAGTATGGCCACCCGAGCTGGTCCG AGTCATGAAAGAAACCAAAGAACCTTTCTTGAACTTGATTTACGACTCCGATCCACTCGAGCAAATCGTCTTCGAAGAGGCCAACGTTGTGTTGGTCGGC GATGCAGCGCACCCGACCACTCCCCACTGCTTAAGGAGCACAAACATGTCGATTCTCGACGCAGCAGTGCTGGGTAAGTGCGTGGAGAAATGGGGCGTGG AGGGTTTGGCTTCGGCGCTGGACGAGTATCAACGAGTTAGGGTGCCGGTAACCTCGGAGCAAGTGCTGCACTCACGACGGGTTGGGAGGATCAAGCAACG GCTGAGTTCCGAGGAGTGTGGAGAGATTGTTCGCCAGAGGAATATGCCTTTCTTTCATGGTGCTCCTCTGTCTCTGGATTGA
AA sequence Show only first row Show all	>Lus10008089 pacid=23169760 polypeptide=Lus10008089 locus=Lus10008089.g ID=Lus10008089.BGIv1.0 annot-version=v1.0 MAPKAIIVGGSIAGICCAHSLLLAGWQVTVIEKSSSPPTESSTGAGLCLDPPTLHFPSIHRPETKSRRVLTRDEQFEFRAAHWADLHRLLYTSLPPDNSA SFLWGHLYQSFSVSKKDNKSSVSVKSKVLQTGEIVEITGDLLVAADGCLSAVRRTFLPDLGLRYSGYCAWRGVLDFSGKEDSDTISDMRRAYPDLGKCLY FDLSSEGTHSVFYELLNSRLNWIWYVHHPNPELKGSSSTSVTMKVSREMTEDMYKKAEKVWPPELVRVMKETKEPFLNLIYDSDPLEQIVFEEANVVLVG DAAHPTTPHCLRSTNMSILDAAVLGKCVEKWGVEGLASALDEYQRVRVPVTSEQVLHSRRVGRIKQRLSSEECGEIVRQRNMPFFHGAPLSLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10008089 [exp]	0	1
					Lus10024153 [exp]	3.7	0.8263
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10002311 [exp]	10.1	0.8195
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005367 [exp]	10.8	0.8121
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10040192 [exp]	11.6	0.8118
AT3G49060			U-box domain-containing protei...		Lus10014772 [exp]	12.6	0.8043
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10000864 [exp]	16.6	0.7819
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10043237 [exp]	18.7	0.7585
AT5G16720			Protein of unknown function, D...		Lus10010755 [exp]	19.4	0.8170
AT3G27110			Peptidase family M48 family pr...		Lus10032044 [exp]	20.2	0.7820
AT3G27110			Peptidase family M48 family pr...		Lus10035210 [exp]	25.4	0.7770

Compare expression of checked genes

Lus10008089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.