Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15520 1981 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT2G36380 1719 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G66950 1716 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G26910 1685 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT1G59870 1647 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT1G15210 1642 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT3G16340 1620 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT3G30842 1526 / 0 ABCG38, PDR10, ATPDR10 ATP-binding cassette G38, pleiotropic drug resistance 10 (.1) AT2G29940 1493 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT3G53480 1453 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024061 [exp] 1994 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 1991 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 1980 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10034020 [exp] 1882 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041683 [exp] 1864 / 0 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024062 [exp] 1742 / 0 AT1G15520 1820 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10019453 [exp] 1724 / 0 AT2G26910 2354 / 0.0 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) Lus10025824 [exp] 1644 / 0 AT1G59870 2220 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) Lus10014150 [exp] 1633 / 0 AT3G16340 2221 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G032900 [exp] 2285 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 2248 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048900 [exp] 2070 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 2068 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 2068 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 2064 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 2060 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 2036 / 0 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 1989 / 0 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G049000 [exp] 1816 / 0 AT1G15520 1847 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0181 [flax] [poplar] PF08370 [flax] [poplar] PDR_assoc Plant PDR ABC transporter associated CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10008090 pacid=23169775 polypeptide=Lus10008090 locus=Lus10008090.g ID=Lus10008090.BGIv1.0 annot-version=v1.0 ATGGAAGCTAACAGAATAAGCAGCGCGAGGATCAGCAGCGCGAGGATAAGCAGCTCGAACGTATGGAGGAACAGCACGGCAGAGATGGTGTTTTCGAAGT CAGCTCGAGAAGAGGACGACGACGAAGAAGCCCTGAAATGGGCTGCTCTGGAGAAGCTCCCTACCTACTTGAGGATAAGGAGAGGGATCCTGAAGAATGA AGACGGCGGGGGCGAGTCGAGGGAGATCGACATAACTACCGACTTGGGGTTCTTGGAGAAGAGGAACTTGTTGGAGAGGCTCGTCAGGATTGCTGACGAG GATAATGAGAATTTCTTGTTGAAGCTCAAGCATCGGATTGACAGGGTCGGGTTGGAAATGCCGATGATCGAAGTGAGGTTCGAGCATTTAAACGTGGAGG CCGAGGCGCATGTTGGAGGCAGTGGTTTGCCTACTGTCGTCAACTTCTGTATCAACCTGCTCGAGGGATGCTTGAACTCTCTTCACATCCTACCAAGCAG GAAGAAACCACTCCCAATCCTTCATGATGTTAGTGGAATCATCAAGCCAGGAAGAATGGCTTTGCTATTAGGCCCTCCAGGATCTGGGAAAACAACCTTG CTCTTGGCCTTGGCTGGGAAACTTGGTAAAGATTTGAAGTTTTCAGGAACAGTTACATACAATGGACATAAGATGGATGAGTTTGTGCCACAGAGGACTT CAGCTTACATCAGTCAGTATGATCTTCACATTGGAGAATTGACTGTGAGAGAAACCCTGGCTTTCTCTGCAAGATGCCAAGGGGTCGGACCTCGTTACGA TATTTTGACTGAGCTTTCAAGAAGGGAGAAAATAGCCAACATTAAGCCGGATCCTGATATCGATTTGTTCATGAAGGCTGCAGCTTTGGAAGGCCAAGAA GCCAATGTTGTTACCGACTACATCCTCAAGATCTTAGGACTTGAAGTATGTGCTGACACATTGGTGGGTGATGAGATGGTAAGGGGGATATCAGGAGGGC AAAAGAAGAGAGTCACAACTGCGGAGATGCTGGTTGGACCGGCACGAGCTCTATTCATGGACGAGATATCGACCGGTTTGGACAGCTCGACGACTTTCCA GATAGTGAACTCACTCAAACAGTCTATCCATATATTGGATGGGACTGCGCTCATCTCTCTCTTGCAGCCTGCACCGGAAACCTATGACCTTTTCGACGAC ATCGTACTTCTTTCGGATGGGTACATTGTTTACCTCGGCCCGAGAGACAACGTGCTCGAATTCTTCGAGCATATGGGGTTCAAATGTCCCGAGAGGAAAG GAGTCGCTGACTTCTTGCAAGAGGTGACATCAAGGAAGGATCAAGAGCAGTACTGGGTGCAAAGAGATGAACCTTACAACTTCATCACATCAAAAGAGTT TGCTGAAGCTTTCCAGTCGTTCCACATCGGCCGAAAGCAAGGAGACGAGCTTGCTACACCTTTCGACAAGTCGAAAGGCCACCCGGATGCCCTGACAACT GACAAGTTTGGTGTCAACAAGAAAAAGCTTCTCAAAGTTTGCATCTCAAGGGAGTATCTCCTCATGAAGAGGAACTCCTTTGTCTATATTTTCAAGATGT TTCAGCTGATCTTCCTGTCTTTCGTGACGATGACGGTGTTCCTGAGGACAAACATGCACCACAGGACAGTGCAGGATGGAGGGGCATACATGGGAGCAAT CTTCTTCTCATTGATCATAGTTGTGTTCAATGGATTGTCAGAGTTGGCCATGACTATACAGAAACTTCCAGTGTTCTACAAGCAAAGAGACCTTCTCTTC TACCCTTCATGGGCTTATGCTCTTCCTTCATGGATTCTCAAGATCCCCATTTCCTTTGTCGAGGTTGCAATCTGGGTTGTCATCACCTATTATCCCATTG GCTTTGATCCAAACATTGCAAGGTTTGTGAAGCAGTACCTGTTATTCGTGTTGGGAAACCAGATGGCTTCAGGGCTGTTTAGACTAACAGGTGCACTAGG AAGGAATATGATCATTGCCAACACAGTTGGCTCATTTTTCCTAATCGCTCTACTAGTATTGGGTGGGTTCATCATCTCAAGAGACAATGTGAAGAAATGG TGGCTCTGGGGTTACTGGACCTCCCCCTTGATGTATATGCAGAATGCTCTCACTGTCAACGAATTCCTCGGCCACGGTTGGAGTCATGTACCGCCTAACT CGACTGATTCACTCGGAGTCCAGGTCCTGAAGTCGCGCGGACTTGTCCCTCATGCGCACATGTATTGGGCCGGAGTCGGGGCATTGGTCGTGTTCATGCT TCTTTGCAACTTCCTGTATGTCGTAGCTCTCAAGTATCTAGACCCATTTGGCAGGTCGCGGGCAATCATCCCGAAACAAGATTCGGAAGAAAGAATCAAC TCGCATGAAGCCACATCGAATATCGAATTGCTAACGAGCGGAGGAAATGGTAATGAGAGCAGGAAAAGCATTTCAACAAGGACACCATCGGCAAGAGTCG GGAACTTCAATGACGGAAGTCGTCCGGAGAACAGAGGGAGAAGAGGAATGGTCCTTCCCTTTCTCCCACTATCCATAACCTTTGACGAGATCAGATACTC GGTCGATATGCCACAGGAGATGAAAGCTCAGGGAATCCCCGAGGACCGTCTAGAACTGCTCAAAGGTGTGACCGGAGCGTTCCGGCCAGGAGTCCTGACA GCCCTGATGGGAGTCAGCGGAGCCGGCAAAACCACCTTGATGGATGTCCTTGCCGGGAGGAAAACCGGTGGATACATTGAAGGAACCATCAAGATTTCAG GGTATTTGAAGAAGCAAGAAACTTTTGCTCGGATCGCAGGATACTGCGAGCAGAATGATATACATTCCCCGCATGTTACAGTCTACGAGTCGTTGGTTTT CTCTGCATGGCTCAGGCTCTCTCCTGAAACTAATTCCGTAACACGAAAGATGTTTGTTGAAGAGGTGATGGAGCTAGTCGAGCTGACTCCGCTAAGAGAC GCACTCGTCGGGTTGCCTGGAGTGAACGGTTTATCGACCGAGCAGCGAAAGAGGCTCACCATTGCAGTCGAACTCGTGGCTAACCCGTCTATAATTTTCA TGGACGAACCAACTTCCGGACTCGACGCAAGAGCTGCAGCCATTGTTATGAGAACAGTGAGGAACACTGTCGACACAGGACGAACTGTCGTTTGCACCAT TCATCAGCCTAGCATTGACATATTCGATGCTTTCGATGAGATGCTGCTGTTGAAGAGAGGTGGGGAGGAAATCTTTGTCGGTCCAATCGGCCGCCACGCC TGTCATCTGATCAAGTACTTTGAGGCCATTGATGGAGTTCCGAAGATAAAAGATGGATACAATCCTGCAACATGGATGCTAGAGATCACTTCAGCAGCAC AAGAAGACACACTTGGTGTAAACTTCACGGACATATACAAGAATTCAGAATTATACAGGAGGAACAAAGACTTGATGAAGGAGCTAAGCACGCCGGTGCC AGGATCGAATGATATCTACTTCGAAAGGAAATACTCTCAATCCTTCTTTACTCAATGCCTGGCTTGCCTGAAGAAGCAGCATTGGTCTTACTGGCGAAAC CCGCCATATAATTCCGTCCGATTCCTCTTCACAACGTTTATCGCTCTGATGTTCGGGTCAATCTTCTGGGGTCTAGGCTCCAAAAGAGAAAGCCGACAGG ATATCCTCAACTCGATGGGCTCCATGTATGCAGCAGTTCTCTTCATCGGATTCCAGAATTGTGCCGGAGTCCAACCGATTGTATCCATCGAAAGAACGGT TTTTTACCGAGAAAGAGCAGCTGGAATGTACTCTGAGTTGCCATATGCCTTTGGACAGGTTGTGATCGAACTTCCGTACGTTTTAGTCCAAACCCTCATC TACGGAGTAGTAGTTTACGCAATGATCGGATTCGAGTGGACCGCTGTCAAGTTCTTCTGGTACATCTTCTGCATGTACTTCACATTGCTCTACTTCACTC TCTATGGAATGATGTCGGTCGCCATCTCTCCGAATCACAACATCGCGGCCATAATTTCGACTTTCTTCTTCGGTGTATGGAACCTCTTCTCAGGTTTCAT CGTCCCAAGACCGATGATACCAATCTGGTGGAGATGGTACTACTGGGTGTGCCCAGTTGCCTGGACGTTGTATGGAATGATTGCATCGCAGTTCGGAGAC ATAACTGGAAAATTCGAGGGAAGCGACGAGACAGTGGAGCAGTTCCTCCATAACTACTTCGGATTCCGGCATGACTTTGTTGGTGTTGCTGCCATTGTTC TTGCTGGAATCTGTGTCCTGTTTGGATTCATCTTTGCCTTCTCTATCAAGAGGGCTGCATACGAACCGAGCATGCTCGAAAACAATACACTAACCGGTCC ATGA
AA sequence Show only first row Show all	>Lus10008090 pacid=23169775 polypeptide=Lus10008090 locus=Lus10008090.g ID=Lus10008090.BGIv1.0 annot-version=v1.0 MEANRISSARISSARISSSNVWRNSTAEMVFSKSAREEDDDEEALKWAALEKLPTYLRIRRGILKNEDGGGESREIDITTDLGFLEKRNLLERLVRIADE DNENFLLKLKHRIDRVGLEMPMIEVRFEHLNVEAEAHVGGSGLPTVVNFCINLLEGCLNSLHILPSRKKPLPILHDVSGIIKPGRMALLLGPPGSGKTTL LLALAGKLGKDLKFSGTVTYNGHKMDEFVPQRTSAYISQYDLHIGELTVRETLAFSARCQGVGPRYDILTELSRREKIANIKPDPDIDLFMKAAALEGQE ANVVTDYILKILGLEVCADTLVGDEMVRGISGGQKKRVTTAEMLVGPARALFMDEISTGLDSSTTFQIVNSLKQSIHILDGTALISLLQPAPETYDLFDD IVLLSDGYIVYLGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSRKDQEQYWVQRDEPYNFITSKEFAEAFQSFHIGRKQGDELATPFDKSKGHPDALTT DKFGVNKKKLLKVCISREYLLMKRNSFVYIFKMFQLIFLSFVTMTVFLRTNMHHRTVQDGGAYMGAIFFSLIIVVFNGLSELAMTIQKLPVFYKQRDLLF YPSWAYALPSWILKIPISFVEVAIWVVITYYPIGFDPNIARFVKQYLLFVLGNQMASGLFRLTGALGRNMIIANTVGSFFLIALLVLGGFIISRDNVKKW WLWGYWTSPLMYMQNALTVNEFLGHGWSHVPPNSTDSLGVQVLKSRGLVPHAHMYWAGVGALVVFMLLCNFLYVVALKYLDPFGRSRAIIPKQDSEERIN SHEATSNIELLTSGGNGNESRKSISTRTPSARVGNFNDGSRPENRGRRGMVLPFLPLSITFDEIRYSVDMPQEMKAQGIPEDRLELLKGVTGAFRPGVLT ALMGVSGAGKTTLMDVLAGRKTGGYIEGTIKISGYLKKQETFARIAGYCEQNDIHSPHVTVYESLVFSAWLRLSPETNSVTRKMFVEEVMELVELTPLRD ALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDEMLLLKRGGEEIFVGPIGRHA CHLIKYFEAIDGVPKIKDGYNPATWMLEITSAAQEDTLGVNFTDIYKNSELYRRNKDLMKELSTPVPGSNDIYFERKYSQSFFTQCLACLKKQHWSYWRN PPYNSVRFLFTTFIALMFGSIFWGLGSKRESRQDILNSMGSMYAAVLFIGFQNCAGVQPIVSIERTVFYRERAAGMYSELPYAFGQVVIELPYVLVQTLI YGVVVYAMIGFEWTAVKFFWYIFCMYFTLLYFTLYGMMSVAISPNHNIAAIISTFFFGVWNLFSGFIVPRPMIPIWWRWYYWVCPVAWTLYGMIASQFGD ITGKFEGSDETVEQFLHNYFGFRHDFVGVAAIVLAGICVLFGFIFAFSIKRAAYEPSMLENNTLTGP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10008090 [exp]	0	1
AT5G06740			Concanavalin A-like lectin pro...		Lus10016257 [exp]	2.8	0.9468
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10010427 [exp]	3.2	0.9442
AT1G68400			leucine-rich repeat transmembr...		Lus10040653 [exp]	3.5	0.9385
AT2G37240			Thioredoxin superfamily protei...		Lus10013051 [exp]	5.7	0.9226
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10036296 [exp]	6.2	0.9426
AT5G17680			disease resistance protein (TI...		Lus10003749 [exp]	11.7	0.9081
AT5G51500			Plant invertase/pectin methyle...		Lus10031140 [exp]	12.2	0.9146
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	12.4	0.9343
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003455 [exp]	13.7	0.9262
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10032035 [exp]	16.6	0.9210

Compare expression of checked genes

Lus10008090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.