Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25620 466 / 6e-165 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT2G33700 312 / 3e-104 Protein phosphatase 2C family protein (.1) AT3G51470 299 / 1e-99 Protein phosphatase 2C family protein (.1) AT3G62260 268 / 5e-87 Protein phosphatase 2C family protein (.1.2) AT1G48040 241 / 1e-76 Protein phosphatase 2C family protein (.1) AT3G17250 228 / 4e-71 Protein phosphatase 2C family protein (.1) AT5G10740 142 / 4e-39 Protein phosphatase 2C family protein (.1) AT5G24940 139 / 4e-37 Protein phosphatase 2C family protein (.1) AT2G25070 135 / 2e-36 Protein phosphatase 2C family protein (.1) AT1G18030 135 / 3e-36 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013124 [exp] 640 / 0 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10001682 [exp] 334 / 1e-112 AT2G25620 381 / 6e-131 DNA-binding protein phosphatase 1 (.1) Lus10016030 [exp] 320 / 3e-107 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10030731 [exp] 318 / 2e-106 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 314 / 1e-104 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10012244 [exp] 309 / 3e-102 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10038058 [exp] 241 / 2e-76 AT3G62260 442 / 4e-155 Protein phosphatase 2C family protein (.1.2) Lus10009993 [exp] 238 / 2e-75 AT3G62260 446 / 1e-156 Protein phosphatase 2C family protein (.1.2) Lus10017106 [exp] 228 / 2e-71 AT1G48040 422 / 2e-147 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G033000 [exp] 504 / 6e-180 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G248400 [exp] 503 / 2e-179 AT2G25620 478 / 5e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G059600 [exp] 351 / 2e-119 AT2G25620 375 / 9e-129 DNA-binding protein phosphatase 1 (.1) Potri.018G115100 [exp] 337 / 3e-114 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.005G253700 [exp] 319 / 6e-107 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 313 / 1e-104 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 308 / 1e-102 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 301 / 7e-100 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 270 / 1e-87 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.002G190400 [exp] 258 / 3e-83 AT3G62260 436 / 6e-153 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10008091 pacid=23169726 polypeptide=Lus10008091 locus=Lus10008091.g ID=Lus10008091.BGIv1.0 annot-version=v1.0 ATGATGGAAGGAAATGTGGAAGAAAATGGAAGCTCTAGCAACAAACCTCCTCCGCCGCCGCCGCCGTATCGCCCCCGGGGGGTGGCCCATGCGGGATATA TGGCGGCGCTGTCTCTTTGTCTTGTGAAGACATCTACATTGGATATCTCTGTGGAATCTGAAGTTAGCATACAAGCACATGTAACCGATTACATTCCCAT CGTCCGATCGGGAGCTTGTTCGGACATTGGATTTCGCCCGAACATGGAAGATGTGTACACTTGTGTGGATGATTTCGCAACTGACTATGGTCTCAAGCAT CAAATCGATCAGCCTAATGCCTTCTATGGGGTTTTTGATGGCCATGGAGGAAAGCATGCTGCGGATTTTGCATGCCACCATTTGCCAAGACTGATCATTG AGGATGAAGAATTTCCTAGAGATATAGAAAGGGTCATTGCATCTGCTTTTCAGCAGACTGACAGTGCTTTCGCAGAGGCTTGCTTGCTCGATGCTGAACT TGCCTCCGGCACCACTGCATTAGCAGCACTTGTTGTGGGAAGGTTATTGGTGGTGGCAAATGCCGGAGACTGCCGGGCAGTGCTATCTCGTCGGGGCAAA GCAGTTGAGATGTCTAGGGATCACAAGCCGGTTTGCAGCCGAGAACAGGAACGCATCGAAGCATGTGGCGGATACGTTTCCGACGGTTACCTTAACGGAC AGCTCAATGTTGCCCGCGCCATAGGAGATTGGCACATGGAAGGACTGAAAGGCACTGAAGGGATCATCGGCCCTCTAAGCTCCGAACCAGAGCTTATTAC CACAAAACTCACACAAGACGACGAATTCCTCATCATAGGATGCGACGGGATATGGGACGTGTTCCGGAGCCAGAATGCGGTGGACTTTGCCCGGCGGAGG CTTCAAGAACACAACGACCCGGTCCTTTGCAGCCGGGACTTGGTCGATGAGGCGTTAAAGAGGAAGAGTGGTGACAATCTTGCTGCCGTTGTTGTTTGTT TTCAGTCCGGCCCACCTCCCAATTTGGTCGCCCCTCGTCGTAGGGTGCAAAGGAGCTTCTCGGCCGAGGGTCTGAAAGAGCTGCAAAGCTTCTTGGATGA CTTAGCGACTTGA
AA sequence Show only first row Show all	>Lus10008091 pacid=23169726 polypeptide=Lus10008091 locus=Lus10008091.g ID=Lus10008091.BGIv1.0 annot-version=v1.0 MMEGNVEENGSSSNKPPPPPPPYRPRGVAHAGYMAALSLCLVKTSTLDISVESEVSIQAHVTDYIPIVRSGACSDIGFRPNMEDVYTCVDDFATDYGLKH QIDQPNAFYGVFDGHGGKHAADFACHHLPRLIIEDEEFPRDIERVIASAFQQTDSAFAEACLLDAELASGTTALAALVVGRLLVVANAGDCRAVLSRRGK AVEMSRDHKPVCSREQERIEACGGYVSDGYLNGQLNVARAIGDWHMEGLKGTEGIIGPLSSEPELITTKLTQDDEFLIIGCDGIWDVFRSQNAVDFARRR LQEHNDPVLCSRDLVDEALKRKSGDNLAAVVVCFQSGPPPNLVAPRRRVQRSFSAEGLKELQSFLDDLAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10008091 [exp]	0	1
AT3G23670		PAKRP1L ,KINESI...	phragmoplast-associated kinesi...		Lus10041262 [exp]	2.4	0.8537
AT1G69420			DHHC-type zinc finger family p...		Lus10037133 [exp]	4.2	0.8600
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10013124 [exp]	5.0	0.8663
AT3G54250			GHMP kinase family protein (.1...		Lus10008966 [exp]	9.3	0.7525
AT2G40980			Protein kinase superfamily pro...		Lus10015685 [exp]	14.1	0.8045
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10004676 [exp]	15.4	0.8432
AT1G75640			Leucine-rich receptor-like pro...		Lus10033926 [exp]	15.6	0.7894
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10007440 [exp]	18.4	0.7794
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	18.6	0.7999
AT4G32840		PFK6	phosphofructokinase 6 (.1)		Lus10005488 [exp]	19.2	0.7709

Compare expression of checked genes

Lus10008091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.