Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11320 574 / 0 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G32540 574 / 0 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT1G04180 485 / 3e-171 YUC9 YUCCA 9 (.1) AT4G13260 484 / 4e-171 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT1G04610 479 / 2e-168 YUC3 YUCCA 3 (.1) AT4G28720 475 / 3e-167 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G43890 471 / 1e-165 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT5G25620 470 / 4e-165 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT2G33230 456 / 2e-159 YUC7 YUCCA 7 (.1) AT1G21430 345 / 8e-117 YUC11 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013125 [exp] 819 / 0 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10035244 [exp] 493 / 3e-174 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10011093 [exp] 492 / 7e-174 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10023695 [exp] 492 / 2e-173 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10023637 [exp] 488 / 2e-172 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10022851 [exp] 474 / 1e-166 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10041729 [exp] 469 / 1e-164 AT5G25620 473 / 6e-166 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Lus10024023 [exp] 467 / 3e-164 AT5G25620 479 / 7e-169 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Lus10011274 [exp] 462 / 3e-162 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G248200 [exp] 628 / 0 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.018G033200 [exp] 611 / 0 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.006G243400 [exp] 503 / 7e-178 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 500 / 9e-177 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.002G254200 [exp] 489 / 5e-173 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.008G174600 [exp] 487 / 1e-171 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.007G028200 [exp] 485 / 2e-171 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.010G062400 [exp] 473 / 9e-165 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.002G207400 [exp] 353 / 4e-120 AT1G48910 429 / 3e-150 YUCCA 10, Flavin-containing monooxygenase family protein (.1) Potri.005G186100 [exp] 353 / 6e-120 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10008092 pacid=23169731 polypeptide=Lus10008092 locus=Lus10008092.g ID=Lus10008092.BGIv1.0 annot-version=v1.0 ATGAATCCTTCTACGCAAACCAAACAGAGGAAACAAGTGTGGGTGAACGGAGCAATCATCGTCGGAGCAGGCCCGTCGGGGCTAGCAACCGCCGCGTGTC TGTCACAACACGGCGTGGCGTCCTTAATCCTCGAGAAATCAGACTGCATCGCTTCTCTCTGGCAGCACAAAACCTACGACCGGCTCAAACTCCACCTCCC CAAACATTTCTGCCAGCTGCCGCTCATGGGTTTCCCCGACGACTTCCCCAAATACCCTACCAAGCACCAGTTCTTAACTTACTTACAATCCTACGCCGCC CATTTCAACATCCGCCCAATCTTCAACCAGTCCGTGTCCGCCGCGGGATTCGACCCTTCTGCTGCCATGTGGATGGTTCGCACCGACGAGTTCCTCTACA TTTCCCGGTGGCTAATCGTCGCCACTGGCGAGAACGCCGTTCCCGTCATCCCCGAAATCGCCGGGATGGGGAAGTTCAAAGGGCGCGTGGTCCACACCAG TGAGTATAAATCGGCGAAAGAGTTCGGCGGCCAGAAAGTTCTCGTCGTCGGATGTGGAAATTCCGGCATGGAAGTTAGCCTCGACCTTTGCCGGAACAAT GCCGTGCCTTACATGGTTGTTCGGAACACGGTGCACGTTTTGCCGAGGGAGATGATGGGGATGTCGACGTTCGGAGTAGCGATGGCGCTGCTGAAATGGC TGCCGTTGAGATTTGTCGACAGAGTTTTGCTATCCGCGGCGAGTTTGTTCTTGGGTAACACCGAAGAATTGGGCCTCCGGCGGCCCAAAGCCGGCCCGCT TGAGCTTAAGAATGTCACCGGGAAAACTCCGGTGCTTGATGTTGGTGCTCTGTCACAGATTAGATCCGGCAAGATTAAGGTGATGGAGGGTGTAAAAGAG ATTACGAAAACCGGAGCCAAATTCTTGGATGGACAAGAGAAGGAGTTTGATTCAATCATTTTGGCTACTGGGTACAAGAGCAACGTTCCCACTTGGCTCA AGGGGAGCGATTTCTTCACTGAAGAAGGGATGCCGAGGACGGAGTTTCCCAACGGGTGGAAAGGGGAGGACGGATTGTATACGGTGGGGTTCACGAGAAG AGGGTTGCTGGGAACGGCGGCGGACGCCGTTAAGATTGCTGGTGACGTGGCCGGTCAGTGGAGGAATGTTAAGGATTGTTGTAATTCCCATATTATCCTC CTCAGATCATCATCCTGA
AA sequence Show only first row Show all	>Lus10008092 pacid=23169731 polypeptide=Lus10008092 locus=Lus10008092.g ID=Lus10008092.BGIv1.0 annot-version=v1.0 MNPSTQTKQRKQVWVNGAIIVGAGPSGLATAACLSQHGVASLILEKSDCIASLWQHKTYDRLKLHLPKHFCQLPLMGFPDDFPKYPTKHQFLTYLQSYAA HFNIRPIFNQSVSAAGFDPSAAMWMVRTDEFLYISRWLIVATGENAVPVIPEIAGMGKFKGRVVHTSEYKSAKEFGGQKVLVVGCGNSGMEVSLDLCRNN AVPYMVVRNTVHVLPREMMGMSTFGVAMALLKWLPLRFVDRVLLSAASLFLGNTEELGLRRPKAGPLELKNVTGKTPVLDVGALSQIRSGKIKVMEGVKE ITKTGAKFLDGQEKEFDSIILATGYKSNVPTWLKGSDFFTEEGMPRTEFPNGWKGEDGLYTVGFTRRGLLGTAADAVKIAGDVAGQWRNVKDCCNSHIIL LRSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10008092 [exp]	0	1
AT5G48090		ELP1	EDM2-like protein1 (.1.2)		Lus10002268 [exp]	2.0	0.9821
AT3G02645			Plant protein of unknown funct...		Lus10031159 [exp]	3.0	0.9782
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	4.7	0.9796
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Lus10014386 [exp]	6.6	0.9780
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10032240 [exp]	8.1	0.9726
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	9.2	0.9709
AT3G55930			Pre-mRNA-splicing factor 3 (.1...		Lus10031931 [exp]	9.2	0.9615
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10001540 [exp]	10.7	0.9714
AT3G06520			agenet domain-containing prote...		Lus10017088 [exp]	11.2	0.9595
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	11.7	0.9707

Compare expression of checked genes

Lus10008092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.