Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32235 60 / 4e-10 unknown protein AT2G38690 40 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013126 [exp] 390 / 1e-136 AT2G32235 68 / 1e-12 unknown protein Lus10022042 [exp] 89 / 3e-21 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G147100 [exp] 82 / 3e-18 AT2G32235 58 / 4e-10 unknown protein Potri.004G028100 [exp] 77 / 4e-16 AT2G32235 63 / 2e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008093 pacid=23169745 polypeptide=Lus10008093 locus=Lus10008093.g ID=Lus10008093.BGIv1.0 annot-version=v1.0 ATGAGCAGTCTCATCGAAGCCAGTGAATTACAGAGCGCGAAGAAGATGAGCTCCGACGACGATCTCAATCAATATTTCAAGACCGACGAATCCATCGATC ACGGAGTTCTCCACTTGAACCCCGATCACCACCACGGCCACAGCTCCCACTCTCGTTGCTCCTCCTGCGGTTGTTTCGGCTCCCCAACCTCCGCCGCCAA ATCCAACAAACGCCGCTCGCCGGAGTCCATTCCTGAGGAGGAGGCGGAGAATCCGTTTCGAAAATCGCCAATGCAGTTACTCAAGAGGCCCAAGAGAATG GTGTTCGATCCTTCCGAATCCCTCTCCAACTTCTCGATCCCTCCCGGATACTCCAAGATCACTCTCTCTCCCACTGCCGCGCAGCCGGAATCCGCCGCCA ATCCCAATCTCCGACGATCGCCTCCGCTGATATCTGGATCGGACGTCGGGACTTGCTCTCAAGACCCAACTCGCCAATCGCCGCCGCCGGACGGTACCAG AAATGTCGAGACTAACGATTCCTCCGCCACGCCGTCGTCCAAGGCCGCCGGACTGCCTCCACTCCCGCCGCTGAGGAGAGCTTGGTCGCTACCGTCGCCA AAAAACTCTGGACCGTCATTTTCATACGACGTCGTTTTGCCCCAGCCTCAACTCCCCGGAGAGAAGCTGAAGGTAATGAAGGACTGGATCAAGGAGTTCG TTAAGTTGCTGGATGAATGTCAGACTGTTGAAGAGATCAAGCCAGTAAATAATAAGCAAGAAGAGGAAGTTTTGCCTGATGATGATTCAGCTAAGCAGGA TGGATCAGAAGCTACTGGATGTGAAGAATCTGTGAATGTGGAGAGAACTGGGGAGTGCTTGATCATAAACTTCAAGTGTCCATGCAAGAAAGGATACCAG ATTCTTCTCTCTGGAACCAGCTGCTACTACAAGCTCGAGTAG
AA sequence Show only first row Show all	>Lus10008093 pacid=23169745 polypeptide=Lus10008093 locus=Lus10008093.g ID=Lus10008093.BGIv1.0 annot-version=v1.0 MSSLIEASELQSAKKMSSDDDLNQYFKTDESIDHGVLHLNPDHHHGHSSHSRCSSCGCFGSPTSAAKSNKRRSPESIPEEEAENPFRKSPMQLLKRPKRM VFDPSESLSNFSIPPGYSKITLSPTAAQPESAANPNLRRSPPLISGSDVGTCSQDPTRQSPPPDGTRNVETNDSSATPSSKAAGLPPLPPLRRAWSLPSP KNSGPSFSYDVVLPQPQLPGEKLKVMKDWIKEFVKLLDECQTVEEIKPVNNKQEEEVLPDDDSAKQDGSEATGCEESVNVERTGECLIINFKCPCKKGYQ ILLSGTSCYYKLE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32235			unknown protein		Lus10008093 [exp]	0	1
					Lus10017936 [exp]	1.4	0.8748
					Lus10041974 [exp]	2.0	0.8558
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10026569 [exp]	3.0	0.8542
AT5G60770		ATNRT2.4	ARABIDOPSIS THALIANA NITRATE T...		Lus10016119 [exp]	8.9	0.7975
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10023007 [exp]	10.0	0.7703
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10016582 [exp]	17.7	0.7800
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	18.4	0.7728
AT3G19920			unknown protein		Lus10010180 [exp]	25.7	0.7435
AT1G63740			Disease resistance protein (TI...		Lus10010546 [exp]	28.7	0.7444
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10010196 [exp]	33.2	0.8229

Compare expression of checked genes

Lus10008093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.